Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00701 ATGTCAACTCCTGCAAGGAAGAGACTTATGAGAGATTTTAAAAGATTGCAACAAGATCCCCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGACCGGATGACACCCCTTGGGATGGAGGCACATTTAAGTTAACACTTCAGTTCGCCGAGGATTATCCGAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAATGGAAGCATATGCTTGGACATTTTACAAAATCAATGGAGCCCAATTTATGATGTAGCTGCAATACTTACCTCAATTCAGTCGTTGCTTTGCGACCCAAATCCTAACTCTCCAGCGAATTCAGAAGCGGCTCGGATGTTTAGTGAAAACAAACGTGAATACAACAGAAGAGTAAGAGAGATTGTTGAGCAGAGTTGGACTGCTGATTAA 450 0.4222 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFAEDYPNKPPTVRFVSQMFHPNNGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00701 149 SUPERFAMILY UBC-like 1 147 IPR016135 -
Cca06g00701 149 CDD UBCc 7 142 IPR000608 -
Cca06g00701 149 Pfam Ubiquitin-conjugating enzyme 8 141 IPR000608 -
Cca06g00701 149 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 147 IPR000608 -
Cca06g00701 149 SMART ubc_7 7 147 - -
Cca06g00701 149 Gene3D Ubiquitin Conjugating Enzyme 2 146 IPR016135 -
Cca06g00701 149 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 149 - -
Cca06g00701 149 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00701 Cca-Chr6 19193297 19196242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00701 7 117 Miscellaneous Gene Families AT1G17280 30.579 2.75e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00701 K10573 - fve:101312627 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00701 06 19193297 19196242 Cca06g00701 06 19193297 19196242 ECH