Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00691 ATGAATTCTGGTGGGTACGCTGTAGAGGTTACGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTCCGTGACTTCTTTGCTTTCTCTGGTGTCATTCAGAATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACTGCATATGTGACGTTCAAAGAGGCTTATGCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACAATATCAAGATGAATTTGATTTTTGGAACCGGCCCTCCTATAGTCACGAGGATGAGTCTGCTTCAACTACACCACAAAGCAGTCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTTGTTAAGACCATGCTAGCAAAGGGATATGTTCTCAGTAAGGATGCACTAGCTAAGGCGAAGGACTTTGATGACTCTCATCAAGTTTCTGCCACTGCAACAGCAAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTCGCAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAAAGATACAATGTCTCCGAAACAACCATGGCGGCCGCATCCACAGCAGGAAGATCAGTAGCAGCGGCTGCAAATACTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCATTGTGGGTGTCAGGTGCTTTAAACAGAGCAGCTCAAGTTGCTTCTGATTTGGGTACTCGCAGGGATAGGCAGTAA 735 0.4517 MNSGGYAVEVTGLSPKATDKDVRDFFAFSGVIQNVEIIRSGDYACTAYVTFKEAYAQETACLLSGATILDQRVCITRWGQYQDEFDFWNRPSYSHEDESASTTPQSSQFVSSAGEAVTMAQEVVKTMLAKGYVLSKDALAKAKDFDDSHQVSATATAKVSELSQRIGLADKISAGIGAVKSVDQRYNVSETTMAAASTAGRSVAAAANTLVNSSYFSKGALWVSGALNRAAQVASDLGTRRDRQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00691 244 Gene3D - 2 84 IPR012677 -
Cca06g00691 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Cca06g00691 244 SUPERFAMILY RNA-binding domain, RBD 7 78 IPR035979 GO:0003676
Cca06g00691 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 244 - -
Cca06g00691 244 CDD RRM_Vip1_like 8 76 IPR034360 -
Cca06g00691 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Cca06g00691 244 SMART rrm1_1 7 77 IPR000504 GO:0003723
Cca06g00691 244 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00691 Cca-Chr6 19004376 19007208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00691 - - gsj:114378905 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00691 06 19004376 19007208 Cca06g00691 06 19004376 19007208 ECH