Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00687 ATGAAGTGTCTGCTAGAGTTGGACATCAAGAATGGCAAGCGCCCTATGGAGATTGATGATGTTGAGGATGAGCCCCAACAACTAAGGAAGAGTACTAAGAAGTTGAATTCTTGCCACAGAGTTGAAATGACTCGAATTTTGTTTCAAGAGCAATCTATTGAGGCCAAGAATTCTATTGAAGATGGAGATTTGACTAACTGGCTATCGAACAAGCAAGAACAAAAGAGTGATGCTGGTGACCATCAATCTGATAAACAACATCAGGGTCAGCTAAAAGATTCTTTACACTTTGATGTTCGATTATCTGATGAAGAACATTTGCAACATGACGAGAAGAGTGAATATGGTTCTTCAGATTCTGATTCTCTCTTGCCACGCATGAACCGTGACAGCTCAATTGCGTGTCTTAGCCGTTGTTCAAGGTCAGATTACGGTTCTCTCGCATCACTAAACAAGAGCTTTAGGAACGTAATCAGAAGTGGTGAACTCTACACATGGAGGAGACTGAATGGTATCATGGAGCATTGGATTTATTTTTCCAGTGCTCTCTTGGAATGGGAAGCCTATGATCCAATTCGTGGACGATGGATGCATTTACCAAGGATGGCTTCTAATGAATGTTTCATGTGTTCAGATAAGGAATCTTTGGCAGTAGGTACTGATCTTCTTGTGTTTGGGAGGGAGTTAAAATCTCATGTCATTTACAGATATAGTCTCTTGACAAACTCATGGTCATCTGGAATGAAAATGAATGCTCCAAGGTGCTTGTTTGGCTCTGCTAGCCTTGGGGAGATTGCAATTCTGGCTGGAGGGTGTGATTCAGAGGGACACATACTAGACTCTGTTGAACTCTACAATTCCGAGACACAAACATGGGAAACACTCCCAAGTATGAAAAAACCAAGGAAGATGTGTTCTGGGGTATTCATGGATGGAAAGTTTTATGTCATAGGGGGGATTGGGGGAAGTGGTTGTTCTAAGCTCTTAACATGTGGAGAGGAGTATGATTTACAAACTAGGACATGGAGAGAGATTCCTAACATGTCCCCTGAAAGAAGTAATAGAGGGCAGGAGATGCATGCAACAGTTGAGCCACCACTTTTGCTTACTGTGTTAAATGATGAATTGTATGTTGCTGATTACACTGACATGGAGGTTAAGAAGTATGATAAGAGCAAAAAATTGTGGTTTAGCATTGGGAGATTGCCTGAGAGAGCAGTGTCTATGAATGGTTGGGGTCTTGCATTTAGGGCATGTGGGAATAGGCTTATTGTGATTGGTGGAACAAGGAGTCATGGTGAAGGTTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGGCCTCCACGGTGGGATCTACTTGCTAGAAAACGCTCTGGAAACTTTGTTTATAATTGTGCTGTGATGGGATGTTGA 1416 0.4202 MKCLLELDIKNGKRPMEIDDVEDEPQQLRKSTKKLNSCHRVEMTRILFQEQSIEAKNSIEDGDLTNWLSNKQEQKSDAGDHQSDKQHQGQLKDSLHFDVRLSDEEHLQHDEKSEYGSSDSDSLLPRMNRDSSIACLSRCSRSDYGSLASLNKSFRNVIRSGELYTWRRLNGIMEHWIYFSSALLEWEAYDPIRGRWMHLPRMASNECFMCSDKESLAVGTDLLVFGRELKSHVIYRYSLLTNSWSSGMKMNAPRCLFGSASLGEIAILAGGCDSEGHILDSVELYNSETQTWETLPSMKKPRKMCSGVFMDGKFYVIGGIGGSGCSKLLTCGEEYDLQTRTWREIPNMSPERSNRGQEMHATVEPPLLLTVLNDELYVADYTDMEVKKYDKSKKLWFSIGRLPERAVSMNGWGLAFRACGNRLIVIGGTRSHGEGFIELNSWVPSEGPPRWDLLARKRSGNFVYNCAVMGC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00687 471 Gene3D - 168 452 IPR015915 GO:0005515
Cca06g00687 471 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 5 471 - -
Cca06g00687 471 SUPERFAMILY Kelch motif 178 467 IPR015915 GO:0005515
Cca06g00687 471 Pfam Kelch motif 301 349 IPR006652 GO:0005515
Cca06g00687 471 Pfam Kelch motif 253 298 IPR006652 GO:0005515
Cca06g00687 471 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 5 471 - -
Cca06g00687 471 SMART kelc_smart 221 264 IPR006652 GO:0005515
Cca06g00687 471 SMART kelc_smart 265 312 IPR006652 GO:0005515
Cca06g00687 471 SMART kelc_smart 313 362 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00687 Cca-Chr6 18908790 18910205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00687 130 369 EF-hand Containing Proteins AT4G39560 26.250 1.62e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00687 - - gmx:100818865 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00687 06 18908790 18910205 Cca06g00687 06 18908790 18910205 ECH