Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00676 ATGGGAACTACCATGATGAGATGTTCCCACGCCAACGCTCTCTTCAGAGTTCTCAAATCCAAACCCAAACCCCGCAATTCACTTCCACTTTCTTCATTGCATATCAACCAAGGTACTAGTGGGAAGGCATATGATGCGTTGCTGTTGGATGCCGGGGGCACCCTTTTGCAATTGGCAAAGCCAGTTGAGGACACTTATGCTGCTATTGGATCCAAATACGGTGTGACTGTCAATCCTGCTATGATAAAGCAAGGATTTAAGAGAGCATTTGCTGCTCCTTGGCCTGAAAAGCTACGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTCTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCCAATTTTGACAACCGCTTAAGGAAGCTATTGAAGGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCAGCTCTAGATCAAGTAAAAGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAAAAGGCAGATAAACTGGGGGCAAGTGCTGTGGGGATTGATTGCTGGTTATGGGGTATTGATGTGAAGACATTCTCTGATATACAAATTCGCATCCTCAATTCCGACGCATAA 771 0.4293 MGTTMMRCSHANALFRVLKSKPKPRNSLPLSSLHINQGTSGKAYDALLLDAGGTLLQLAKPVEDTYAAIGSKYGVTVNPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITLLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDQVKVEACKALHIGDDQKADKLGASAVGIDCWLWGIDVKTFSDIQIRILNSDA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00676 256 SFLD Haloacid Dehalogenase 44 236 - -
Cca06g00676 256 Gene3D - 60 132 IPR044924 -
Cca06g00676 256 PANTHER - 1 255 - -
Cca06g00676 256 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 47 236 IPR011949 -
Cca06g00676 256 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 44 236 - -
Cca06g00676 256 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 44 55 IPR006439 -
Cca06g00676 256 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 150 163 IPR006439 -
Cca06g00676 256 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 180 196 IPR006439 -
Cca06g00676 256 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 198 218 IPR006439 -
Cca06g00676 256 Pfam Haloacid dehalogenase-like hydrolase 122 234 IPR041492 -
Cca06g00676 256 SUPERFAMILY HAD-like 44 237 IPR036412 -
Cca06g00676 256 CDD HAD_dREG-2_like 143 253 - -
Cca06g00676 256 PANTHER F14L17.7 PROTEIN 1 255 - -
Cca06g00676 256 Gene3D - 48 236 IPR023214 -
Cca06g00676 256 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 149 231 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00676 Cca-Chr6 18631126 18634352 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00676 - - gmx:100306694 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00676 06 18631126 18634352 Cca06g00676 06 18631126 18634352 ECH