Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00648 ATGGAGTCTAAGGGATCCACTTTGACCAAGCTTCTGTTGCTGCTAAACATTTCCTTGGTTCTATGTGCTTCAGAGGATTTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGATCATACTGTGACACACAGAAGACTTGTTGCTACCCCACAACTGGTAAACCTGATGCAGATTTTGGCATTCATGGTCTGTGGCCTAATTACAATGATGGATCATACCCTTCTAATTGTGATCCTAACAACCCTTTCCAGGAATCTGAGATATCTGATCTCAAAAGCAGTTTGCAAAGTAATTGGCCCACACTGGCCTGTCCAAGTGGCGATGGCATACAGTTCTGGACCCATGAATGGGATAAACATGGCACATGTTCTGAGTCTGTCCTTAAGCAACATGACTATTTTCAAGCAGGTCTCAGCCTTAGGGAAAAAACCAACCTCCTCAAAGCTCTTAACAGTGCAGGAATACAACCAGATGGCCAATCCTACAGCTTGAGCAGCATCAAAGGGGCTATAAAGGATGCAATTGGGTTCACTCCTTTCATTGAGTGCAATGTGGACACATCCGGTAACAGCCAGCTATACCAAGTTTACCTTTGTGTGGACACTTCTGGCTCAAACTTGATTGAGTGCACTGTGTTCCCCAAGGGCAAATGTGGCTCAGACATTCAGTTCCCATCTTTTTAG 684 0.4459 MESKGSTLTKLLLLLNISLVLCASEDFDFFYFVQQWPGSYCDTQKTCCYPTTGKPDADFGIHGLWPNYNDGSYPSNCDPNNPFQESEISDLKSSLQSNWPTLACPSGDGIQFWTHEWDKHGTCSESVLKQHDYFQAGLSLREKTNLLKALNSAGIQPDGQSYSLSSIKGAIKDAIGFTPFIECNVDTSGNSQLYQVYLCVDTSGSNLIECTVFPKGKCGSDIQFPSF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00648 227 CDD RNase_T2_euk 27 221 IPR033697 -
Cca06g00648 227 PANTHER BNAA02G26660D PROTEIN 8 227 - -
Cca06g00648 227 PANTHER RIBONUCLEASE T2 8 227 IPR001568 GO:0003723|GO:0033897
Cca06g00648 227 ProSitePatterns Ribonuclease T2 family histidine active site 1. 59 66 IPR018188 GO:0003723|GO:0033897
Cca06g00648 227 ProSitePatterns Ribonuclease T2 family histidine active site 2. 112 123 IPR033130 -
Cca06g00648 227 Pfam Ribonuclease T2 family 27 210 IPR001568 GO:0003723|GO:0033897
Cca06g00648 227 Gene3D - 21 227 IPR036430 GO:0003723|GO:0033897
Cca06g00648 227 SUPERFAMILY Ribonuclease Rh-like 22 226 IPR036430 GO:0003723|GO:0033897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00648 Cca-Chr6 18175814 18178151 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00648 K01166 - gmx:100782011 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00648 06 18175814 18178151 Cca06g00648 06 18175814 18178151 ECH