Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00629 ATGTCAAGCTTCACACACGCCACTACACTCCTCCATGCCCACATCAAAACCAAGCACAAGAAACCCTCCAACACGACCAACCCTTTACCCTTCTCTGCAGACCAAAGCAATGTTGTAAGCATGAGCAGCAGAAGGAAGCTGATGTCAACGTTTCTGGGCACTTCAGCAGCGGTGCTGGTGGGAGTGCATGGGAACAGTGCACTGGCACAGAGCTGGGGCACTCACTCCTTCATCAGGGAGCATTTCTTTGAGCCAGGCCTCTCCCCTGAAGACGCTGTGGCCAGGATAAAGCAAACTGCTGAGGGGCTTCACAGCATTAGGGAGATGTTGGAGACCATGTCTTGGAGGTACATCATGTTCTACATACGTATAAAGCAGGCCTATCTTGACCAGGATTTGAGAACTGCTTTCACCACTCTGCCTGAGAATCGACGCAAGGAGTATGTCAAAACTGCTAATGAGTTGGTCTCCAACTTTGGAGAGTTTGATCGGCATATTCGGACCCCGAAGGTGTACGAATCGTACCTGTACTACGAGAAGACATTGAAGTCTATAGATCAAATTGTGGCCATACTAGCATAG 582 0.4948 MSSFTHATTLLHAHIKTKHKKPSNTTNPLPFSADQSNVVSMSSRRKLMSTFLGTSAAVLVGVHGNSALAQSWGTHSFIREHFFEPGLSPEDAVARIKQTAEGLHSIREMLETMSWRYIMFYIRIKQAYLDQDLRTAFTTLPENRRKEYVKTANELVSNFGEFDRHIRTPKVYESYLYYEKTLKSIDQIVAILA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00629 193 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 69 193 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cca06g00629 193 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 1 193 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cca06g00629 193 Gene3D - 52 192 IPR023222 -
Cca06g00629 193 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC 1 193 - -
Cca06g00629 193 SUPERFAMILY Oxygen-evolving enhancer protein 3, 82 193 IPR023222 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00629 K08901 - gmx:100807480 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00629 06 17898512 17899651 Cca06g00629 06 17898512 17899651 ECH