Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00492 ATGGCTCCTGTGCTCAGCAGAAGCTTAGCCACGGcctccctcgcctcgctccctccctcttcccctcTCGCCGGGGCTTCCCCTCTCAGAACCGCGTTTCTGCCGCCACGGCTCCGCCCCAACTGCTTCTCCGCCGCCCCGGGGCTGAGGTGGGCGCAGCGCCGCGAGCGGCGGAGGGGTGGCCTCGCCGTGCGGTGCGAGGCTGCTGTGGCGGAGAAGGACGAGGCCACAGGGGAGAAGTTTGAGTACCAGGCTGAGGTGAGTAGATTGTTGGATTTGATTGTTCACAGTCTGTATAGCCACAAGGAAGTTTTCCTTCGTGAACTTGTCAGTAATGCTAGTGATGCTTTGGACAAGTTGAGATTCTTAAGTGTGACTGATCCTTCTCTGCTTGGAGATGCTGGAGATCTAGAGATACGTATCAAGTCTGATCCAGACAATGGAACTATTACTATAACAGATACTGGTATTGGAATGACTAAAGAAGAGCTCATTGATTGTCTTGGAACTATTGCTCAGAGTGGTACTTCAAAGTTTTTGAAGGCACTTAAGGAAAATAAGGATCTGGGAGCAGATAATGGTTTGATTGGTCAATTTGGTGTTGGATTCTACTCTGCTTTTCTTGTTGCTGAGAGGGTTGTTGTTTCTACGAAAAGCCCAAGATCAGATAAGCAGTATGTGTGGGAAGCAGTAGCTGACAGTAGCTCTTATGTTATAAGGGAAGAAACTGATCCTGAAAAGATTCTGCGTCGTGGTACACAGATTACACTCTATTTAAGAGAGGATGACAAATATGAATTCTCAGAGCCAACCAGGATTCAGGGTTTGGTGAAGAATTACTCGCAGTTTGTTTCCTTCCCCATTTACACCTGGCAAGAAAAATCAAAAACTGTTGAGGTGgaagaggaggaagaacccaaagaaggtgaagaaccaaaagaagaGGGTGAGAAAAAGAAGGTGAAAAAGACTAAAACTGAGAAGTACTGGGACTGGGAATTAACCAACGAAACAAAGCCAATATGGATGCGTAGCCCAAAGGAAGTTGAAAAGGATGAGTACAATGAGTTTTACAAGAAGACTTTCAGTGAATTCTTAGAACCACTTGCATATACTCACTTCACTACTGAGGGTGAGGTTGAGTTCAGAAGTATTCTATATGTTCCAGGAATGGGGCCTCTTAACAATGAAGAAGTAGTGAACCCTAAAACAAAGAACATACGCTTGTATGTTAAGCGTGTATTCATTTCGGATGATTTTGATGGAGAGCTGTTTCCGCGTTACCTTAGCTTTGTGAAGGGTGTGGTTGATTCAGATGACCTTCCGCTCAATGTTTCTAGGGAGATCCTTCAAGAAAGCAGAATTGTAAGAATAATGAGGAAGAGACTTGTCAGGAAGGCATTTGATATGATTCAAGACCTTGCTGAAAGTGAAAATAAAGAGGATTACAAGAAATTCTGGGAGAACTTCGGTAGGTTCATAAAATTAGGATGCATCGAAGACACTGGAAATCATAAGCGCATAACACCACTATTGAGGTTTTACACTTCCAAAAGTGAGGAGGAACTCAAAAGCCTAGATGATTATGTTGAAAACATGGGTGAAAACCAAAAGGCTATCTTTTACCTAGCTACTGATAGCTTGAAGAGTGCAAAGACTGCTCCATTTTTGGAGAAATTGGTTCAGAAAGATATTGAGGTTCTTTATTTGGTTGAACCTATTGATGAGGTTGCCATTCAGAACCTACAGACATACAAAGAAAAGAAATTTGTTGATATCAGCAAGGAGGATTTGGAATTAGGTGATGAGGATGAGGTCAAAGAGAGGGAAAACAAACAAGAATACAACTTACTTTGTGATTGGATAAAACAACAGCTTGGTGAGAAGGTGGCAAAAGTTCAAATCTCAAAGCGATTGAGTTCATCTCCTTGTGTGCTTGTATCAGGAAAGTTTGGTTGGTCTGCAAACATGGAGAGACTAATGAAGGCTCAAGCTCTTGGAGATACTTCAAGTTTGGAGTTTATGAGGGGTAGGAGAATATTGGAGATCAATACAGATCACCCCATTATCAAAGACTTAAGTGCTGCCTGCAAGAATGCACCCGACAGCAGTGAAGCAAAGAGAGCGGTCGACCTTTTATATGACACAGCACTAATTTCTAGTGGATTTTCTCCTGACAGTCCTTCTGAGTTGGGAAATAAGATTTATGAAATGATGGCCTTGGCCTTGGGAGGAAGATGGGGTAGATCAGAAGAAGAGGAGGGAGATGCATCTGTTGAAACTGATTCAAGCACAGGTGAAGAATCTTCAGAGCCAGAGGTTTATGAACCTTCTGAAGTCATCGCAGAGAGTGATCCTTGGACAACTGATTAG 2373 0.4176 MAPVLSRSLATASLASLPPSSPLAGASPLRTAFLPPRLRPNCFSAAPGLRWAQRRERRRGGLAVRCEAAVAEKDEATGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDPSLLGDAGDLEIRIKSDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSKFLKALKENKDLGADNGLIGQFGVGFYSAFLVAERVVVSTKSPRSDKQYVWEAVADSSSYVIREETDPEKILRRGTQITLYLREDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSKTVEVEEEEEPKEGEEPKEEGEKKKVKKTKTEKYWDWELTNETKPIWMRSPKEVEKDEYNEFYKKTFSEFLEPLAYTHFTTEGEVEFRSILYVPGMGPLNNEEVVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKAFDMIQDLAESENKEDYKKFWENFGRFIKLGCIEDTGNHKRITPLLRFYTSKSEEELKSLDDYVENMGENQKAIFYLATDSLKSAKTAPFLEKLVQKDIEVLYLVEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKERENKQEYNLLCDWIKQQLGEKVAKVQISKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINTDHPIIKDLSAACKNAPDSSEAKRAVDLLYDTALISSGFSPDSPSELGNKIYEMMALALGGRWGRSEEEEGDASVETDSSTGEESSEPEVYEPSEVIAESDPWTTD 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00492 790 CDD HATPase_Hsp90-like 88 284 - -
Cca06g00492 790 PIRSF HSP90_HTPG 53 780 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca06g00492 790 SUPERFAMILY HSP90 C-terminal domain 618 739 IPR037196 -
Cca06g00492 790 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 102 261 IPR003594 -
Cca06g00492 790 Gene3D - 336 508 - -
Cca06g00492 790 MobiDBLite consensus disorder prediction 747 790 - -
Cca06g00492 790 MobiDBLite consensus disorder prediction 297 320 - -
Cca06g00492 790 ProSitePatterns Heat shock hsp90 proteins family signature. 99 108 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cca06g00492 790 SUPERFAMILY Ribosomal protein S5 domain 2-like 338 596 IPR020568 -
Cca06g00492 790 Gene3D - 67 309 IPR036890 -
Cca06g00492 790 PANTHER HEAT SHOCK PROTEIN 90-5, CHLOROPLASTIC 26 780 - -
Cca06g00492 790 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 26 780 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca06g00492 790 MobiDBLite consensus disorder prediction 755 774 - -
Cca06g00492 790 Hamap Chaperone protein HtpG [htpG]. 71 740 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca06g00492 790 Gene3D - 596 743 IPR037196 -
Cca06g00492 790 Pfam Hsp90 protein 266 768 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 79 99 IPR020575 -
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 100 122 IPR020575 -
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 149 166 IPR020575 -
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 167 184 IPR020575 -
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 196 218 IPR020575 -
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 251 268 IPR020575 -
Cca06g00492 790 PRINTS 90kDa heat shock protein signature 270 288 IPR020575 -
Cca06g00492 790 Gene3D - 509 595 - -
Cca06g00492 790 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 79 294 IPR036890 -
Cca06g00492 790 SMART HKATPase_4 101 263 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00492 Cca-Chr6 14916862 14924623 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00492 K09487 - gmx:100819778 1346.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00492 06 14916862 14924623 Cca06g00492 06 14916862 14924623 ECH