Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00482 ATGGATGAATTTGCTAATAATGTTCAAGGTGACTTGTATGCTGTAAATGCAGATTTTGGAAAACCCTACTCACTCCAAGGGTTCTCAACTAAAGAAAATGATGTGAAAGAACTGGAAATATCCCTGCAAGCTTTAACAGAAATAGACTATCGTTTAGCCTATTTTTCTGAGAAGCTGGTGAACTTGCATGTCCTTTATATTTATCTATTGGCCGAGGAAAATGATCTTGAAGCAATGGATTCAAATAATAACTGCATCTTGGAAAACTTATTTGAGAAGGCAATGACATTTGATCTTTTGTCTGGCATTTTAGACTCTGAGGTAAGAGAGCTGGACAATTTCATGGACACTCTCCAAGAAGAAATTGTTGATGCTCGTCATAAAATATTCTCATGCAAACATTTGACTGAGGTTTTCTTTATGATGGACAAAAAATTGCATGACTCTGAAGAATCTGTGAAGCAGTTTCAGCAGCAGTTATTGGAGTTGAAAATGCAATCATCCCAGTTACAGAAAACCTTTGAGGCTTTCCAACACGAGAATTGTGAAACGGGGAAGGCCTTGAATTTATCAGGAAATGGTCAACTGACAGATGTGAAAGCAAAATCCAACGATCAGATGGTTGAAAAACGAAGGTATATTCTGCGAATGCTGGAGAAATCTCTCACAAGGGAGCTAGAACTTGAAAGGAAGTTAGCAGAGTCAAGAAAAAATGAAGAGTTAAAGCTGAAACTCCACTACACAGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTAGTTTGGGGAAGATTTCTAGAGGCAGACAATACTGCAGAGGTGTTAATGGGGATTTCTAAAGGTATAATGGGACGCCTTAAGATAACTGAGTTCAACCTCAATGGTTCTATGCAACGCGAAAATGAGCTGAGATCAAAACTTCAAAGTTTGATAGAGCAACTCAAGGATAAAGATGCTGCTTTAGAAAAGTTTGAGACATGTAATGCGGAGAGTATTAAGGAAAAATCTGAGTCTGAGGTGTTGGCTTTGAGAGAAAAGGTGAAATTTCTTGAAGAAGAACGAAAAGATTTTGAGTTTCGTATGAATAATTTGATTGCAGAGAATGAAGCATGTCATGAACAACTACTTGAAATGGAAAATTTTGTTGAGTCTCTGAAGGAAAGCACTGACATGGCAGAAAATCGGGCTGACAGTGCAGAAGCGAAGGTTACACAGTTAACTGATACCAACTTGGAACTTACTGAAGAGCTGAATTTTCTTAAAGGGAGTGCTAGTACTGCAGAGAAGAAGGTTGGTTCACTTGAGAAGCAACTAAGGGAATTAGATATCCAACTACAGAATGCAAAGGCGTCTTCTGAAGCAAGTCAAGAACAGCAGAACATGTTATACACAGCTATATGGGATACGGAAATATTAATTGAAGAGCTTAAATCAAAGGTTTCAAAATCTGAAAGTAATGCAGAGCAATGCTTTGTGCTTTCTGAAACTAACTTAAAGCTAAATAAAGAATTGGATCTTCTTAGGTCCAGAACAATAAGCTTGAAAACATCTTTGGATCAAGCTAGCAATACAAAATTATCAAGTGCAAAAGAAATTGATACTAAAACCAAGCTTATCATGGATATGGTCATGCAACTAGCCTCTGAAAGGGAGCGCATCAATAACCAGTTAGATGCTTTAAAACAGGAAAATAAACATTTGGTTGACAAGTTAAAGAATACCAAAATTGGTGTCCCTTTAGATGCATGCAACAATGGACTAAATAACAGAAACGAAGATCAGGCTTCCAACAATGACTCAAGCAATGATAGCTGTGCTAAATCATCAGATGAAGAAGGAATTGATCATTTTAATAAGACCTTTCAGGCAGGTACTTTTTTGGTGGATGAAGAAGGTGCAAGCTCCGAAACTCGAGTAACATCATCTATTTCAGCAAAAAAGCCTGCAAATTGGAGAAACTTGACATTTCTTTCAGTAGCAATTTTCGTCCCACTGGTTTCTGTAGCTGCAACAATCATAGTTTTCGTCTTCCACCTTTGTCTTGGTGAAGTTTCCAAGCACTCCATCCCTTGGTGTCCGAGAATTCCTACTACCTGCAGTATAAGAAAAAATAAGTTGATATACCAGGATAAGCCCAGGTTAAAAACAACATTAGAAATGTTGAGAATCAGCATTAGCCTTGAAGACAAGTTATATAAGGTGAATCTACCATTTTTTGTATTGCATGAGAAGCAGACACAGTAA 2247 0.3747 MDEFANNVQGDLYAVNADFGKPYSLQGFSTKENDVKELEISLQALTEIDYRLAYFSEKLVNLHVLYIYLLAEENDLEAMDSNNNCILENLFEKAMTFDLLSGILDSEVRELDNFMDTLQEEIVDARHKIFSCKHLTEVFFMMDKKLHDSEESVKQFQQQLLELKMQSSQLQKTFEAFQHENCETGKALNLSGNGQLTDVKAKSNDQMVEKRRYILRMLEKSLTRELELERKLAESRKNEELKLKLHYTEQVAFYMEEAAEVVWGRFLEADNTAEVLMGISKGIMGRLKITEFNLNGSMQRENELRSKLQSLIEQLKDKDAALEKFETCNAESIKEKSESEVLALREKVKFLEEERKDFEFRMNNLIAENEACHEQLLEMENFVESLKESTDMAENRADSAEAKVTQLTDTNLELTEELNFLKGSASTAEKKVGSLEKQLRELDIQLQNAKASSEASQEQQNMLYTAIWDTEILIEELKSKVSKSESNAEQCFVLSETNLKLNKELDLLRSRTISLKTSLDQASNTKLSSAKEIDTKTKLIMDMVMQLASERERINNQLDALKQENKHLVDKLKNTKIGVPLDACNNGLNNRNEDQASNNDSSNDSCAKSSDEEGIDHFNKTFQAGTFLVDEEGASSETRVTSSISAKKPANWRNLTFLSVAIFVPLVSVAATIIVFVFHLCLGEVSKHSIPWCPRIPTTCSIRKNKLIYQDKPRLKTTLEMLRISISLEDKLYKVNLPFFVLHEKQTQ 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00482 748 SUPERFAMILY Tropomyosin 319 563 - -
Cca06g00482 748 Coils Coil 425 459 - -
Cca06g00482 748 Coils Coil 146 173 - -
Cca06g00482 748 MobiDBLite consensus disorder prediction 588 611 - -
Cca06g00482 748 Coils Coil 544 578 - -
Cca06g00482 748 Coils Coil 383 417 - -
Cca06g00482 748 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 14 675 IPR039976 -
Cca06g00482 748 Coils Coil 108 128 - -
Cca06g00482 748 Coils Coil 298 321 - -
Cca06g00482 748 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2 14 675 - -
Cca06g00482 748 Coils Coil 334 368 - -
Cca06g00482 748 Gene3D - 377 472 - -
Cca06g00482 748 MobiDBLite consensus disorder prediction 588 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00482 Cca-Chr6 14628658 14636434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00482 702 743 Acyl Lipid Metabolism Gene Families AT2G47630 71.429 1.47e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00482 - - gmx:100784341 1082.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00482 06 14628658 14636434 Cca06g00482 06 14628658 14636434 ECH