Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00466 ATGAAAGATGACCATTTGGTTTCGCCTTCGTTACCCTTCCAACGCTCTTTCGCTTTGGCTTTGGCTTTCAATCCTTATCTGTTCTTTGTGATTAGACATTCGACCAAACGGTGGCATCAAGAAGTTCAGATCTGCTGCTTATTCCAACTGCGCTCGCAAACCATCCTGATACCCCTCCGGATTGATAGTTCGTTGCATGCAACTTGGTTTTTGTTAGCTTTTTTTGGTTTTCTTTTAGTTTCAGCAATTGGTTTTGAAGGTTATGAGAAAAGGTTGGAAGTAACCTTTTTCCCTCCTGGACTTTTCGCTGACCCTGATGGAAGGGGTTTAAGATCTCTTACGAAGTCCCAGTTGGATGAAATTCTAACGCCAGCTGCTTGCACCATTGTTTCTTCGCTTTGTAATGATGATGTTGACTCTTATGTTCTGTCTGAGTCCAGCCTCTTTGTCTATGCCTACAAGATCATCATTAAAACTTGTGGCACTACAAAGTTACTGCTTGCAATCCCACCCATATTGAAGTTTGCCGAAATGCTTTCCCTTAAAGTCAGATCTGTAACGTACACCAGGGGAAGTTTCATTTTTCCTGGTGCTCAGCCATATCCACATCGCAACTTTTCTGAGGAAGTTGCCATCCTTGATGGCTACTTTGGAAAGCTTGGATCTGGCAGCATGGCATATATTATGGGTTGCCCAGACAAAGCACAAAACTGGCATGTCTACTCTGCCTCTGCTGATTCTGTTGCCCCACGTGACAATGTTTATACTCTTGAGATGTGCATGACGGGCCTTGATAGAGAGAAAGCACTGGTTTTCTTTAAAGATCAATCTGCTTCAGCTGCCGCGATGACAGTTAATTCTGGCATTAGAAACATTCTTCCGGATTCTCAGATATGTGATTTTGATTTTGAGCCTTGTGGTTATTCAATGAATTCTGTTGAAGGGGCTGCTGTTTCTACCATTCATATTACTCCAGAAGATGGTTTCAGCTATGCAAGCTTTGAGTCAGTGGGGTATGATCTGAAAGTTGTTAACGTGAACGAATTGGTTAATAGGGTGTTGGCCTGTTTCCTACCAAATGAGTTTTCAGTAGCCGTTCGTGTGGATGGTGCAATCAAGTCATTGGAGCAGACTTGTTTTGTGGATGTTAAGGGATACTATCGCGAAGAGAGGAGCCTCGAGGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAAATTCTCTAAGATTTCTGACTGTGCTTCACCTAGATCAACTCTGAAGTGCTGGAAAGATGAAGATGAAGAAGAGTAG 1293 0.4308 MKDDHLVSPSLPFQRSFALALAFNPYLFFVIRHSTKRWHQEVQICCLFQLRSQTILIPLRIDSSLHATWFLLAFFGFLLVSAIGFEGYEKRLEVTFFPPGLFADPDGRGLRSLTKSQLDEILTPAACTIVSSLCNDDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKFAEMLSLKVRSVTYTRGSFIFPGAQPYPHRNFSEEVAILDGYFGKLGSGSMAYIMGCPDKAQNWHVYSASADSVAPRDNVYTLEMCMTGLDREKALVFFKDQSASAAAMTVNSGIRNILPDSQICDFDFEPCGYSMNSVEGAAVSTIHITPEDGFSYASFESVGYDLKVVNVNELVNRVLACFLPNEFSVAVRVDGAIKSLEQTCFVDVKGYYREERSLEGLGMGGSVVYQKFSKISDCASPRSTLKCWKDEDEEE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00466 430 ProSitePatterns S-adenosylmethionine decarboxylase signature. 140 150 IPR018166 GO:0004014
Cca06g00466 430 SUPERFAMILY S-adenosylmethionine decarboxylase 88 409 IPR016067 GO:0004014|GO:0008295
Cca06g00466 430 Gene3D - 78 145 - -
Cca06g00466 430 Gene3D - 146 410 - -
Cca06g00466 430 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME 2 79 430 - -
Cca06g00466 430 TIGRFAM SAM_DCase: S-adenosylmethionine decarboxylase proenzyme 85 409 IPR001985 GO:0004014|GO:0006597|GO:0008295
Cca06g00466 430 Pfam Adenosylmethionine decarboxylase 84 407 IPR001985 GO:0004014|GO:0006597|GO:0008295
Cca06g00466 430 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE 79 430 IPR001985 GO:0004014|GO:0006597|GO:0008295
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00466 Cca-Chr6 14184825 14188475 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00466 K01611 - gmx:547981 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00466 06 14184825 14188475 Cca06g00466 06 14184825 14188475 ECH