Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00464 ATGGGTGATGTGATGGGTCCTGACTTGATCAGTGACCTTCCTCAAAGCATTATAGAGAGCATTCTGATGAAGATTCCAATTAGGGATGCTGTGAGAACCAGCATTTTGTCTAGTAAATGGAGGTACAAGTGGTCTTCAATTACTCAACTTGTGTTTGATGACAAATGTGCGCCCTTTAGTTGTGACAGAGAGGTTGTGGGGAGAAGTGTTGCCAAGTTCATAACCAGGGTGTTGTTTCTTCACCAAGGGCCAATCCATAAGTTCCAAATCACGAATTCGAAGTTGCAGAGCTGTCCTGAGATTGATCAGTGGATCCTTTACCTCTCGAGGAATGATATCAAGGAGTTGGTTATGGAGTTGGGAGATGGAGAGTTCTTTAGAATACCTTCAAGCCTTTTCAATTGTAGGAAGTTGAGGCGGTTGGAGCTCTCCCGGTGTGAGTTGGATCCGCCCCTTTGTTTCAAGGGGTTCATGTGCTTGAGGAGCCTTGGCCTTCATCAAGTTTTGATATCCCCTGATGCAGTGGAGAGCCTCATTTCGAAATGCCCTCTCTTGGAGAGTTTGTCAGTGTCTTACTTTGATAATTTGGCTCTTACTATCCGTGCCCCGAATCTTAAGCACTTGTATCTTGAAGGTGAATTCAAGGATATATATCTTGAAGATGCTCCATTTTTGGTTGAAATATCCATTGCTATGTATATGACTGATGACATTGCTGAGCACTTTGAGCAAAGCTCAAATTGCAACTTTGTCAAGTTTCTTGGTGGAGTCCCTAATCTTGAGAAGCTTGTTGGGCTTATCTACTTCACAAAGTATTTGAGCATAGGTATTGACTCGGTGCATCTTCCAATAATGTACAACAATTTGGAGACTATTGAATTATATCAAGTAAATTTTGAGGATACAAAGGAGATACTTGTCATCCTTCATTTGATTACAAGCTCTCCTAATCTAAAAGAACTACAAATTTCAGGTTCATCAAACATAGCAGTTGCTGCCGATTTCCCTGACTTGGATTTTTGGGAAAAAGAATGCCTTTCAGATACTACACTTAACAAGCTTAAAACTGTGAAGTTGTCAGAAATGGGTGGTTGGCCACATGAGATAGAATTTATGAAATATTTGCTCGGTCGTTCTCCTGTGCTTGAGACGTTGAATATCATTCCTTGTGTATTTGATATGGAGAATAATTTGAGAATGTTGATGGAATTGGTGAAATGTCGAAGAGCTTCTACTCAAGCAGAAGTTGTTTTCTACCGTGAGTGA 1266 0.4076 MGDVMGPDLISDLPQSIIESILMKIPIRDAVRTSILSSKWRYKWSSITQLVFDDKCAPFSCDREVVGRSVAKFITRVLFLHQGPIHKFQITNSKLQSCPEIDQWILYLSRNDIKELVMELGDGEFFRIPSSLFNCRKLRRLELSRCELDPPLCFKGFMCLRSLGLHQVLISPDAVESLISKCPLLESLSVSYFDNLALTIRAPNLKHLYLEGEFKDIYLEDAPFLVEISIAMYMTDDIAEHFEQSSNCNFVKFLGGVPNLEKLVGLIYFTKYLSIGIDSVHLPIMYNNLETIELYQVNFEDTKEILVILHLITSSPNLKELQISGSSNIAVAADFPDLDFWEKECLSDTTLNKLKTVKLSEMGGWPHEIEFMKYLLGRSPVLETLNIIPCVFDMENNLRMLMELVKCRRASTQAEVVFYRE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00464 421 SUPERFAMILY RNI-like 105 405 - -
Cca06g00464 421 PANTHER - 5 388 - -
Cca06g00464 421 SMART 9598neu4hmm 344 419 IPR006566 -
Cca06g00464 421 Pfam FBD 351 387 IPR006566 -
Cca06g00464 421 Gene3D Ribonuclease Inhibitor 88 390 IPR032675 -
Cca06g00464 421 SUPERFAMILY F-box domain 5 79 IPR036047 GO:0005515
Cca06g00464 421 PANTHER F-BOX PROTEIN-LIKE 5 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00464 Cca-Chr6 14140216 14143092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00464 8 214 EF-hand Containing Proteins AT5G41840 22.222 7.48e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00464 - - gmx:100781833 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00464 06 14140216 14143092 Cca06g00464 06 14140216 14143092 ECH