Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00463 ATGAACCACCCCTTCTACAGTTGCAGCTTTCGTTGCCACTACAACCTCTTCTACCACAGGTTCGTTTGGTTGAGCACCATGAAGATGAGAATTGTTCCAAAACTCTCTCCTGCTCAATCTGAGTCTTCTCCAGAGTCTGAGAAGATGGGGGATCATGGTGCACACATCGATCGAATCAGTGACTTACCAAGGAATTTAATTGATGTCATTCTACAACACTTGCCAATCGAAGATCTAGTTAAGACAACTATACTGTCAAGGAAATGGAGGTATATGTGGACTTCTGTCCCACAACTTAAGTTCAATAGTAATTTTTTTAGCAAGTGTGAGGATCTTGGATGCCTTGAAACTTATGTTACTGTTACGAAGCTGCTTCTTCTCTATGATGGCCCCATGCATAAGTTTATTCTTGAAATCCCTTCAAACTTCCCAATCCAAAGGAAACTATTCAATGAGTGGATTCTGTTTTTGTCAAGGAAAGGTGTTAAACATCTTGAACTTGTAAACCTTGCAAATTTACGAAGAGTTCCCTGTCAAATGCCATCTCATATCTTCTCTTGTCAGGAATTGACTTACCTTAAACTTCATAATTTTGAACTGTCAACTAGTCTTGATTTTGGTGGCTTTAGAAATCTGGTGGAGCTTCGGTTATATGTAATTGTGTTTGAGTCGGATGCACTTGAGAGTCTTATGTCTGGTTGTCCCTTACTTGAGAAGCTCATCATTTTTCACTGTTCTGGTTTCCAACATGTAAATGTCCATGCCCCTACTCTCAAAGTCTTTCACGTATATGATTCTGAGGTTATCAAGTCGATTAGTTTGAAGCATAAACATAATCTGATTGAGCTCATACTCTCGGCTAATACACTTGTGAATAACGTTGAGGGTGGCTGGGTATGTGATTTGCTGAAAGGTTTGCTGAAAATTGAGAGGCTCTGTCTGGGAAGAGGTTATTTCAAGATATTTTCTGCTATCAATCCACCAGTGCTGCTTCGTTCTCCTAACTTGGAGGAACTTGTTATAGAGAGTAAAAGAGATGCTGTGGAGCCACAAGTGATTTCGAAGGAATTTGAATCCATTGACTGTTGTTTTAGTCGGCTTCAAATTGTGAAACTTGAAGTTGAAACTGAATACAAGCATGCCCTTAATTTGATTCGGTTAGTGCTTGCAAAGGCCTCATCATTGAAGGTTCTTAGTTTCAAGGTTGGCTTTGGTTTAAGTCGATCAGAGGCTCCTATATTGTTAGGTTATGTCTGCAAGCATCAATCCACATGTGCAAATTTTGAATATCATGAATTGGGTGATGTGAATTTTAATAAATTCCGAAAGTGTGAATCTTGTTCGAGTTTACTTATGATCTGGTACCAGAAAAAGGCTTATCTTGACGACTACATTGATCGAATCAGTGACTTACCTAGGAATGTAATTGGTAACATCTTACAATATTTGCCCATCCAAGAACAAGTTAGAACCAGTATTCTGTCAAGGAAATGGAGGCATAAGTGGGCTTCAGCCCCACAACTTGAGTTCAATGGTAACTTTTTTGAGAAGTGTCATGAGTCTGGAGTTGATTCTTCTAGTTTAGTTACTGAAGTTCTTCTGCTCCACAATGGCCCGCTACACAAGTGTACTTTTTACCTCCCTCCAATATATTACAAACCAGTGAGAGAGGAATGTATCAGTAAGTGGATTCTGTTTTTGGCAAGGAAAGGGGTTAAAGTTCTTGAGCTTGAGAACATAGGAGAAGATACCTATCAAACTCCATCTCATGTCTTCTCTTGTCACGACTTGACGTATCTTCACCTTGGGAGTTTTATTCTGTCAACAGTGCCCAATTTTCATGGCTTTAAAAGTCTGGTTGACCTTAACTTGTATTACATGAAATTTGAGTCATGTGCATTTGAGTGTCTTGTTTCTGGCTGTCCCTCACTTTTGAAGCTCACCATTTATCACTGTTCTGGTTTGGAAGATTTTTATGTCTCTTCTGCTCTCAAAAGTTTGCACATAGAAGATGACGAAGTTATCAAGTCAATTTGTTTGAAGCAAACACAAAATTTGGCTTCTATCACACTCTTGGCTAATGGACTTGGGGATGAAATTGACAGAGAATGGGTAACTGATTTGTTCAAAGACTTGTCGAAACTAGAGAGACTATCACTGGGAACAGCTTATATTGAGATTTTGTCTGCAGGTGTAGGCATCAATCTGCAAGTGCTGCTTAAAGATGTAAAACATCTGGAATTGAAGGGTGTGAATTTCATTGAAGCAAGAGAACTTTTTTTTATTATTCATCTGCTTGAAAGTTGTTCTAACCTAGAGAAACTTGTGATAAAGTTAAAACTTCCTATAAGCCTGCACTTGACTTTACTCGGTTTGTGCTTGCAAATTCCCCGGCATTCAAAAAGCTTACTTTCAAGATGGAGCGAGCTTCACCAAGATCACAAGTTAAATTCCTTCACGGTGCCCGTTTATGTTATTTTTGATTTTGGCCTTCCAGCCCCAACTCCTTTTGTTTTCATATATTTTATTTTTCCTAGAATAAACTCTCCTTCATCTCCCATTCACCAAACCTTTCGAAGGTGTCTCTCGCTGAATCTTGTTCAGAGTTTACTTATGATCAGGTGCCAGAAAAAGGTTTGTCTTGACGATAACACCGATCGAATCAGTGACTTACCAAGGAATGTGATTGATAATATCTTACGATACTTGTCCATAGATGACCTAGTTAAGACCAGTATACTCTCAAGGAAATGGAGGTATATGTGGGCTTCAGTTCCACAACTGGAGTTTGATAATGACTTCTTTCTGACTTGTGAGTGTGTGGAAGGAATCGAATCTTCTAGTATAATTACAGAAATTCTTTTGCTCCACAGTGGTCCGCTACATAAGTTCACAGTTCACTTTTCTTCAGAAGATTTTATCTCAGTCGAAAATGTATGCATCAATAAGTGGATTCTGTTTTTGTCAAGGAAAGGGGTTAAAGTTCTTGAGCTTGAGAACCTACAAGAAAAACCCTATCAAATACCATCTCATATCTTCTCTTGCCATGACTTGACTCATATTCACCTAAGTAATTTTGAACTGCCACCTGTGCTCAACTTTTGTGGCTTTAAAAGTTTGGTTGACCTTCACTTGTTTGACATTATATTTAAGTCGGGTGTTCTTGAGAGTCTTGTGTCTGGTTGTCCCATACTTGTGAAGCTCACCGTTTCTTATTGTTCTGGTTATGAACGTATTTATGTCTCTTCTCCTGCTCTCAAAAGCCTACACATAGAAGATGACAAAGTTATCAAGTCAATTTGTTTGAAGCAAGCACAAAATTTGACTTCTCTCACACTCTTGGCTGATGGACCTGGTGATAACATTGACAGAGACTGGGTAACTGATTTGTTGAAAGACTTGTCAAAACTCAAAAGGATATCACTGGGAACAGGTTACATTGAGATTCTGTCTCCAGGTGTAGGCATCAATCTGCCAGTGCTGCTTAAAGATGTAAAACATCTGGAATTGAATGGTGTGAAGTTAATTGAAGCAAGAGAACTTTTGTTTATTGGTTATGTGCTTGAAAGTTCTTCTAACCTAGAGGAACTTGTTATAAAGAATAATAGCGAGGATGTGGAGACACAACTGATTTTTAGGGATTTTGACTGCGCTAACTTTATTAAGCTTCAAACTGTAAACATCACAGTTAAAACTTTGTATGAGCCTGCACTTGACTTTATACGGTTTGTGCTTGCAAGTTCCCCGGCATTGGAGATCCTTACTTTCAAGGTTGATTTTGGTCTATCAGATGCAGCAAAATTGTTAAGTATTTCAAGTGATTTGCTGCGGATGGAGCGAGCATCGCCAAGAGCACGAGTTAAACTCCTTCATGATGTTCTTATTAAATAG 3891 0.3873 MNHPFYSCSFRCHYNLFYHRFVWLSTMKMRIVPKLSPAQSESSPESEKMGDHGAHIDRISDLPRNLIDVILQHLPIEDLVKTTILSRKWRYMWTSVPQLKFNSNFFSKCEDLGCLETYVTVTKLLLLYDGPMHKFILEIPSNFPIQRKLFNEWILFLSRKGVKHLELVNLANLRRVPCQMPSHIFSCQELTYLKLHNFELSTSLDFGGFRNLVELRLYVIVFESDALESLMSGCPLLEKLIIFHCSGFQHVNVHAPTLKVFHVYDSEVIKSISLKHKHNLIELILSANTLVNNVEGGWVCDLLKGLLKIERLCLGRGYFKIFSAINPPVLLRSPNLEELVIESKRDAVEPQVISKEFESIDCCFSRLQIVKLEVETEYKHALNLIRLVLAKASSLKVLSFKVGFGLSRSEAPILLGYVCKHQSTCANFEYHELGDVNFNKFRKCESCSSLLMIWYQKKAYLDDYIDRISDLPRNVIGNILQYLPIQEQVRTSILSRKWRHKWASAPQLEFNGNFFEKCHESGVDSSSLVTEVLLLHNGPLHKCTFYLPPIYYKPVREECISKWILFLARKGVKVLELENIGEDTYQTPSHVFSCHDLTYLHLGSFILSTVPNFHGFKSLVDLNLYYMKFESCAFECLVSGCPSLLKLTIYHCSGLEDFYVSSALKSLHIEDDEVIKSICLKQTQNLASITLLANGLGDEIDREWVTDLFKDLSKLERLSLGTAYIEILSAGVGINLQVLLKDVKHLELKGVNFIEARELFFIIHLLESCSNLEKLVIKLKLPISLHLTLLGLCLQIPRHSKSLLSRWSELHQDHKLNSFTVPVYVIFDFGLPAPTPFVFIYFIFPRINSPSSPIHQTFRRCLSLNLVQSLLMIRCQKKVCLDDNTDRISDLPRNVIDNILRYLSIDDLVKTSILSRKWRYMWASVPQLEFDNDFFLTCECVEGIESSSIITEILLLHSGPLHKFTVHFSSEDFISVENVCINKWILFLSRKGVKVLELENLQEKPYQIPSHIFSCHDLTHIHLSNFELPPVLNFCGFKSLVDLHLFDIIFKSGVLESLVSGCPILVKLTVSYCSGYERIYVSSPALKSLHIEDDKVIKSICLKQAQNLTSLTLLADGPGDNIDRDWVTDLLKDLSKLKRISLGTGYIEILSPGVGINLPVLLKDVKHLELNGVKLIEARELLFIGYVLESSSNLEELVIKNNSEDVETQLIFRDFDCANFIKLQTVNITVKTLYEPALDFIRFVLASSPALEILTFKVDFGLSDAAKLLSISSDLLRMERASPRARVKLLHDVLIK 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00463 1296 Pfam F-box domain 59 96 IPR001810 GO:0005515
Cca06g00463 1296 Pfam F-box domain 468 500 IPR001810 GO:0005515
Cca06g00463 1296 Pfam F-box domain 888 924 IPR001810 GO:0005515
Cca06g00463 1296 SUPERFAMILY RNI-like 991 1256 - -
Cca06g00463 1296 ProSiteProfiles F-box domain profile. 885 919 IPR001810 GO:0005515
Cca06g00463 1296 SMART fbox_2 471 510 IPR001810 GO:0005515
Cca06g00463 1296 SMART fbox_2 62 103 IPR001810 GO:0005515
Cca06g00463 1296 SMART fbox_2 891 932 IPR001810 GO:0005515
Cca06g00463 1296 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 455 778 - -
Cca06g00463 1296 Gene3D - 874 928 - -
Cca06g00463 1296 Pfam Leucine Rich Repeat 1043 1063 IPR013101 -
Cca06g00463 1296 ProSiteProfiles F-box domain profile. 56 109 IPR001810 GO:0005515
Cca06g00463 1296 Gene3D Ribonuclease Inhibitor 568 794 IPR032675 -
Cca06g00463 1296 Gene3D Ribonuclease Inhibitor 981 1257 IPR032675 -
Cca06g00463 1296 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 53 402 - -
Cca06g00463 1296 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 876 1278 - -
Cca06g00463 1296 Gene3D Ribonuclease Inhibitor 146 470 IPR032675 -
Cca06g00463 1296 SUPERFAMILY F-box domain 55 104 IPR036047 GO:0005515
Cca06g00463 1296 SMART 9598neu4hmm 1216 1290 IPR006566 -
Cca06g00463 1296 SUPERFAMILY F-box domain 465 508 IPR036047 GO:0005515
Cca06g00463 1296 SUPERFAMILY RNI-like 566 780 - -
Cca06g00463 1296 ProSiteProfiles F-box domain profile. 465 499 IPR001810 GO:0005515
Cca06g00463 1296 SUPERFAMILY F-box domain 885 945 IPR036047 GO:0005515
Cca06g00463 1296 SUPERFAMILY RNI-like 154 342 - -
Cca06g00463 1296 PANTHER CYCLIN-LIKE F-BOX 53 402 - -
Cca06g00463 1296 PANTHER CYCLIN-LIKE F-BOX 876 1278 - -
Cca06g00463 1296 PANTHER CYCLIN-LIKE F-BOX 455 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00463 Cca-Chr6 14111967 14128509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00463 456 649 EF-hand Containing Proteins AT5G41840 27.315 2.54e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00463 - - ccaj:109791275 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00463 06 14111967 14128509 Cca06g00463 06 14111967 14128509 ECH