Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00350 ATGGAGAGAGTGGCGTCCTGGGCCGGAACGACGTCGTGTGAGAAGAGCGTGTACGTGAGCTGGGAGGAGGTGTTCGTGTCGAGCGACAAGGGGAGGCGAGAGGTTCATTATTTTCTGAAACGACGCGTCGGTGGCTCGGATCTGGCCGTCGTTGGAAAGGAGAAAAGCTTGAGACACATGTCGTATCGCTACGCGATAAAAACGGCGTCGTTGGGGCCTTACTTGAAGCTCAAATCGCGAAGAGAGGTCGTTGATTGGTTGGACGCCGTCGTTTCAGATTCGTCTCCTGGGGATGCGGTTGTGATGGGAAAACATGGTTATGAACCTGAGCTTGGAACTTCCAAGGATAATCAATTGCCGAAGATGCGCCATTCTACAAAAGAATTCTCATGGATAGGGTGTCCATGGACCTGTAGGAAAAGAAGAAAGCACTATCAGGCATTCAAGAGGAACGGTTTTCAGATATCTgtgcatggttttgtatttgttctgGCAGAAGAAGACAAGCGTCTAGTTGCCTACTTGGAAGACCTGTATGAGGATTCCAGAGGCAACAAGATGGTTGTGGTGCGCTGGTTTCACAAAATTGATGAGGTTGGTATTGCTTTGCCTCACAGTTTTAGTGGCAGAGAGGTTTTCTTTTCACTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGATTGGCTTTCGTCCTCAGTCCACAACATTACGAAAAGTTTCAGAATGAGGCACGTCGAACTCACTTGGAACCATTCGTGTGCAGCCACCAGTTTGATAATGATGAATTGAAAACCTTTGATATAACACAGATTAAGGGTTATTGGAAACAGGAAATACTCAGGTACATGTTTACCCAATTGGACTCCAAGTCCAGTGGCAGTTCCGAACAATCTGATGATAGCCCGGAACTTGATGAAAATCACCTGTCTACTGCTTCAATCAGACCTAAGAAGAGGCTGCGTATTACCAAAGATGATGCCAAAGATGCAGTTGATGTAACTGCTCTTAAATCCGAAAATTTGAAAAACAGTAAGAATAATACCAAAATTGGCACCGGAAACAATCCCCTGAAACTGGTTGGACACACAAACATGACAACAACCATAAAAGAAGGAACAAATGAATATGCTTCACTGCATTTGGTTGTAGGTTCCCAAATTGAGGTCCTCTCTCTAGACAGTGGGATGAGAGGATGTTGGTTTAGAGGTTCTGTCATTAAGAGGCACAAAGATAAAGTTAAGGTTCAATATCAAGACATACAGGATGCAGCTGATGAAACTAAGAAGCTTGAGGAATGGATTTTAGCTTCTAGAATTGCAGTGCCTGACATCCTAGGTCTTCGCATGCATGGGAGGACCATGGTCCGGCCAGCTCCACCGTCTAACAAAAGTGAATTATCATGGGTGGGTGATGTTGGTTCCGTTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCCTTGTTGTTCTTAAGGACTCCGAATCTAATTATCATGTTTATTTCCCAGGGGAAAAGGTGGTGTCAGTATTTGGTCCTGGTAACTTGAGACAGTCTCAAGAATGGGTAGTGAATGAGTGGGTGACTGTGAGGGAAAGGCCTGATCTTGTGTCATCTATTTTAACTACCGTGAAAACGAATCAAAACAAGGGCAAATCCACAGACAGCAAATCAGCTCTAGCATCCACTAGAGATGGAGTACAATCTAAGCAATCAGATACCACTTCGGACACTGAAAGGGATAGACTAAGAAATCCGGAACTGGTTTCAGATCTCATGAAGGATGATTTGTTATTCCAGTTAAGGTGGAAGACCACCAGAAAGAGGAGACGGGGAAGTCGCGCATGTCATCGGAAGCCGCCACGGTGTCCCAGCCATAGGAAGAAGTCCCCAAAGGTTCTTAAGTTAGACTCTTCTGACAGTTTTGTGATTCCTGCATCCTTGAAAGTTGATCACGATGACTGCAAATATGGAGGGGATCCTTCCATTTTCAGTTCTTCAGTTGTGCCTTCTCTAACTAATTTGGTTATGTGTAGGTGA 2043 0.4444 MERVASWAGTTSCEKSVYVSWEEVFVSSDKGRREVHYFLKRRVGGSDLAVVGKEKSLRHMSYRYAIKTASLGPYLKLKSRREVVDWLDAVVSDSSPGDAVVMGKHGYEPELGTSKDNQLPKMRHSTKEFSWIGCPWTCRKRRKHYQAFKRNGFQISVHGFVFVLAEEDKRLVAYLEDLYEDSRGNKMVVVRWFHKIDEVGIALPHSFSGREVFFSLYLQDLSIECIDGLAFVLSPQHYEKFQNEARRTHLEPFVCSHQFDNDELKTFDITQIKGYWKQEILRYMFTQLDSKSSGSSEQSDDSPELDENHLSTASIRPKKRLRITKDDAKDAVDVTALKSENLKNSKNNTKIGTGNNPLKLVGHTNMTTTIKEGTNEYASLHLVVGSQIEVLSLDSGMRGCWFRGSVIKRHKDKVKVQYQDIQDAADETKKLEEWILASRIAVPDILGLRMHGRTMVRPAPPSNKSELSWVGDVGSVVDAWWHDGWWEGLVVLKDSESNYHVYFPGEKVVSVFGPGNLRQSQEWVVNEWVTVRERPDLVSSILTTVKTNQNKGKSTDSKSALASTRDGVQSKQSDTTSDTERDRLRNPELVSDLMKDDLLFQLRWKTTRKRRRGSRACHRKPPRCPSHRKKSPKVLKLDSSDSFVIPASLKVDHDDCKYGGDPSIFSSSVVPSLTNLVMCR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00350 680 MobiDBLite consensus disorder prediction 548 587 - -
Cca06g00350 680 MobiDBLite consensus disorder prediction 610 635 - -
Cca06g00350 680 ProSiteProfiles BAH domain profile. 153 270 IPR001025 GO:0003682
Cca06g00350 680 SMART BAH_4 153 270 IPR001025 GO:0003682
Cca06g00350 680 MobiDBLite consensus disorder prediction 610 630 - -
Cca06g00350 680 MobiDBLite consensus disorder prediction 548 574 - -
Cca06g00350 680 Pfam BAH domain 156 267 IPR001025 GO:0003682
Cca06g00350 680 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 15 679 - -
Cca06g00350 680 SMART agenet_At_2 380 446 IPR014002 -
Cca06g00350 680 SMART agenet_At_2 469 525 IPR014002 -
Cca06g00350 680 Gene3D - 124 269 IPR043151 -
Cca06g00350 680 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 15 679 - -
Cca06g00350 680 MobiDBLite consensus disorder prediction 291 311 - -
Cca06g00350 680 Pfam Agenet domain 385 461 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00350 Cca-Chr6 10504221 10507927 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00350 - - gmx:100306709 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00350 06 10504221 10507927 Cca06g00350 06 10504221 10507927 ECH