Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00078 ATGGGTTACCAAGTATTAGAACCCAACCCAGCAACACAAACCCCAAACGCAAAAACGCCGGAAACGACGTCGTTGCGCTCCCCTCGAAAAATTcaaaacaacgaaaaccacgccaacaacaacaacaacaacGGTTACGTGACCGTTACTCCCACGCTCTCAATCGTGCAGCCTCATTCGCTTCTCCCGAAGCCAGTGCCGCCAACGGTTTCCTCCAGAAACGACGCCGTCGTTTCTTCCGACTTCGGGAGATTCCTCCGCCAGCGCGGCAACGACCTGTCGTCCGCGATTTCGCGAGGGATCTCCACGCTGAAGCAGGCGATCGACGAGCAAAACGACGGCGCTTTGAGAGGAGGAAAGCGAAACGACGTGACGGAGTTCAACCTGTCGGGGCTGAAGGTAATGGTGGCGACGGTGAAGAGCGACGCGGCGTTGGCGGTGGCGCGGGGGCGAGTGAGCTTCTTCTCGCGGTCGAATTGCAGAGAGTGCGGTGCGGTGAGAAGGTTCTTCAGAGAGAGAGGGTTGAGGTTCGTGGAGATAAACGTGGACGTGTATAGGGAGCGAGAGAAGGAGTTGAGAGAGAGAACGGGGAGCGCCACGGTGCCGAAGATCTTCTTCGGCGAGAGGCTGATCGGAGGGCTGGTGGAGCTGAACGCGCTCAGGAAGGAcggcggcggggagttggagaggcggctgaggaattgcggcggcgaggggccggcggcgccggcgTACGGGTTCgatgaggcggtgggagaggaggaggaggagATGGTGAAGGTAGTTAGGGTTTTGAGGCAGAGGTTGCCGATTCAGGACAGGTTGATGAAGATGAAGATTGCGAGGAATTGCTTCGGTGGGAGCGAGTTGGTGGAGCTTCTTGTTCGCCACCGTGGCTATGCTCCTCCCAAGGCTGTTGAGATTGGAAAACAGTTATGCAAGAAGCACTTCATTCATCATGTTTTTGGGGAAAATGATTTTGAGGAGGGAAACCACTTCTATAGATTCCTTGAGCACGAACCGTTTATCTCCAAATGCTTTAACTTCCGAGGTGCCACAAATGATACTGAACCGAAGGCTGCAGCTGCAGTGTGTGATAGGCTTACCAAGATTATGTGTGCCATTCTTGAGTCTTATGCTTCTGAAGAGAGACGACATGTTGATTATGTGGCCATTAGCAAAAGCGAAGAGTTTCGGAGGTATGTAAACATGACCCAAGATCTGCAGCGTGTGAATCTCTTGGAATTATCAGAAAACGAGACGCTTGCCTTCTTCTTGAATTTGTACAATTCCATGGTCGTCCATGCTATGATTAGAGTAGGGTGTCAAGAAGGTGTAATTAATAGGAGATCCTTCTCTGATTTCCACTATTTGATTGGAGGCCATCCTTATTCTCTTAGTACTATTAAAAATGGTATCCTCAGAAGCAATCGGAGGTCACCATACTCCTTTATCAAGCCCTTTGGCACAGGAGACAGGCGCTTAGAGCATGCTCTTGTCAAAATGAATCCGTTAGTTCACTTTGGACTTTGTAATGGCACGAAGTCGAGCCCAAAGGTGAGATTTTTCTCACCTTATAGAGTTGCAGAAGAATTGAGATGTGCTGCTAGAGAATTTTTTGAGAATGATGGAATTGAAGTGGACTTGGAAAAGGGGACCATTCATCTCTCTCCAATTTTCAAGTGGTACTCTGCAGATTTCGGACAAGAAAGAAACATACTGAAGTGGATAATAAATTACTTGGATGCAAATAAAGCAGGTCTTTTGACACATCTCTTAGGTGACGGTGGCCATGTTAATATCTCATACACGAGTTATGACTGGTCAATAAATTCCTGA 1839 0.4502 MGYQVLEPNPATQTPNAKTPETTSLRSPRKIQNNENHANNNNNNGYVTVTPTLSIVQPHSLLPKPVPPTVSSRNDAVVSSDFGRFLRQRGNDLSSAISRGISTLKQAIDEQNDGALRGGKRNDVTEFNLSGLKVMVATVKSDAALAVARGRVSFFSRSNCRECGAVRRFFRERGLRFVEINVDVYREREKELRERTGSATVPKIFFGERLIGGLVELNALRKDGGGELERRLRNCGGEGPAAPAYGFDEAVGEEEEEMVKVVRVLRQRLPIQDRLMKMKIARNCFGGSELVELLVRHRGYAPPKAVEIGKQLCKKHFIHHVFGENDFEEGNHFYRFLEHEPFISKCFNFRGATNDTEPKAAAAVCDRLTKIMCAILESYASEERRHVDYVAISKSEEFRRYVNMTQDLQRVNLLELSENETLAFFLNLYNSMVVHAMIRVGCQEGVINRRSFSDFHYLIGGHPYSLSTIKNGILRSNRRSPYSFIKPFGTGDRRLEHALVKMNPLVHFGLCNGTKSSPKVRFFSPYRVAEELRCAAREFFENDGIEVDLEKGTIHLSPIFKWYSADFGQERNILKWIINYLDANKAGLLTHLLGDGGHVNISYTSYDWSINS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00078 612 ProSiteProfiles Glutaredoxin domain profile. 140 239 - -
Cca06g00078 612 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 17 612 - -
Cca06g00078 612 SUPERFAMILY Thioredoxin-like 147 235 IPR036249 -
Cca06g00078 612 SUPERFAMILY "Winged helix" DNA-binding domain 257 354 IPR036390 -
Cca06g00078 612 Pfam Protein of unknown function, DUF547 415 539 IPR006869 -
Cca06g00078 612 Coils Coil 175 195 - -
Cca06g00078 612 Gene3D Glutaredoxin 135 239 - -
Cca06g00078 612 CDD DEP 265 335 - -
Cca06g00078 612 ProSiteProfiles DEP domain profile. 265 338 IPR000591 GO:0035556
Cca06g00078 612 PANTHER DISHEVELLED/EGL-10/LECKSTRIN DOMAIN PROTEIN 17 612 - -
Cca06g00078 612 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 269 336 IPR000591 GO:0035556
Cca06g00078 612 MobiDBLite consensus disorder prediction 7 44 - -
Cca06g00078 612 MobiDBLite consensus disorder prediction 1 44 - -
Cca06g00078 612 Gene3D - 253 388 IPR036388 -
Cca06g00078 612 Pfam Glutaredoxin 153 211 IPR002109 -
Cca06g00078 612 SMART DEP_3 265 338 IPR000591 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00078 Cca-Chr6 1941365 1947750 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00078 - - gmx:100784667 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00078 06 1941365 1947750 Cca06g00078 06 1941365 1947750 ECH