Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00077 ATGATATATATTTTGTACATTAGAGGGCAGATTTGGCCTTGGCCCCATTCATTAACTCCTACCTCCCCTGTCTACCAGTCATGTCCATCTTCACATGTTCACCATTTGCATCACTCAACACCACATTGGTCAAGAGGATTGGAAGTAGCAGCTATGCTGAAGCACAGTGACTTGCAAATCCGCATTAACAATGAGGAAATGTTCCTTTTGGACAAGAAGTTCATATCAAAATACTGTGGCAGAATGAAGAAGATCTTGAACCAAGAAAATAGAATGTGTCACAGCAAAACCTTGAGCATTGAAATCAATGATTTCCCTGGAGGGCCAGAAGGGTTTGAACTGGTTTCAAGATTCTGTTACAACCATGGCAAAATCCCCATCACTGTATACAATGTGCTAATTCTCCATTGTTGTGCCATTTATCTTGGAATGAGTGAAGAGGTCTTCAGCAACAATCTTTTGCAACAAACAAAAACCTTTCTTAAGGGAATCCGTTGCTGGACATGGAATGAAATAGTTGCAAGCCTCAAGAATTGTGACCTACTTTATACATATGCTGATAGCTATGGTCTGTTAGAGAAGATTATTGCTGCAATCGTTGCAAAAATGGATCAAAATTCAGAGGTAAACCTCTTCACCTCCTCATCTCCATCATCCCCATCATCTCCTGAGAGCAATTCTGCCAAGAGATTTTCTTGTTCAACACAACTTACTCCCAAAACTGTGAAGTCAACTTTGCCAAATAAAGCATGGTGGTTTGAGGATTTGACTACTTTACCACCAAAGATAATTGAGAAGATTCTACAGACTATTGGAGCATACAGAACAGACAACAACAACTTAATTCTCACAAGGTTTCTGCTTCAGTATCTGAAAATAGTGACTCTAACAAAAGAGATTAACTGCAAAAACAGTGTTGAGTATGCTGGTCTTGCAGAAACAGCCGTTTATGGGGTCATATCTATTGGTAACAAGAGTTTTTCTTGTAGAGGGCTATTTTGGGTATTAAGGATTGTATCAAGGTTTGGGTTGAGTAGAGATTGCAGAATTGAAATTGAGAAATTGATTGGTGGGGTGCTTGAGCAAGCAACTTTGGATGATCTACTAGTCTTAGGACATCATATGAAACTTTACTATGATGTAACTTTTGTGATAAGGTTGATTAAGCAATTTGTTGATATAAATGGCTCTAATGAGGTGTGTGTGCAGAGGTTGAAAAAAGTTGGTAGATTAGTTGATAAGTATTTGATAGAGATATCCCCTGATCAGAACCTCAAGGTCACTAAGTTTCTTGCAGTTGCAGAATGTTTGCCTGATTGTGCAAGGGATTGCTTTGATGGGGTGTACAGAGCCATTGACATCTATCTTCAGTCTCATCCGATGCTCGCATCAGAGGAGAGGTCAAGATTGTGTAGATGTCTTAATTTCAACAAACTCAGCTTTGAAGTTTGTAAAGATCTTGCAAAGAACCCCAAAATACCTCCAACTATTTCAATGCAAGCTCTTATTTCTCAACAAACGAACATTCCATCAAGTGATGAAAGTGAAATCGTGAACCCTTCCCAAATCATTTTGTACTATGACAAGACTGATAGCTTCTTGGAAGAGAAAGAAGATATGAGACAAAAACTTGAGAGAATGGAATGGCGAGTAAAGGAATTGGAGATATTGTGCAAGGAAATGAAGGTTCATATGTCAAGGTTTCACTAA 1710 0.3865 MIYILYIRGQIWPWPHSLTPTSPVYQSCPSSHVHHLHHSTPHWSRGLEVAAMLKHSDLQIRINNEEMFLLDKKFISKYCGRMKKILNQENRMCHSKTLSIEINDFPGGPEGFELVSRFCYNHGKIPITVYNVLILHCCAIYLGMSEEVFSNNLLQQTKTFLKGIRCWTWNEIVASLKNCDLLYTYADSYGLLEKIIAAIVAKMDQNSEVNLFTSSSPSSPSSPESNSAKRFSCSTQLTPKTVKSTLPNKAWWFEDLTTLPPKIIEKILQTIGAYRTDNNNLILTRFLLQYLKIVTLTKEINCKNSVEYAGLAETAVYGVISIGNKSFSCRGLFWVLRIVSRFGLSRDCRIEIEKLIGGVLEQATLDDLLVLGHHMKLYYDVTFVIRLIKQFVDINGSNEVCVQRLKKVGRLVDKYLIEISPDQNLKVTKFLAVAECLPDCARDCFDGVYRAIDIYLQSHPMLASEERSRLCRCLNFNKLSFEVCKDLAKNPKIPPTISMQALISQQTNIPSSDESEIVNPSQIILYYDKTDSFLEEKEDMRQKLERMEWRVKELEILCKEMKVHMSRFH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00077 569 Coils Coil 537 564 - -
Cca06g00077 569 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 54 561 - -
Cca06g00077 569 PANTHER OS12G0117600 PROTEIN 54 561 IPR043454 -
Cca06g00077 569 SUPERFAMILY POZ domain 55 146 IPR011333 -
Cca06g00077 569 ProSiteProfiles NPH3 domain profile. 250 508 IPR027356 -
Cca06g00077 569 MobiDBLite consensus disorder prediction 212 233 - -
Cca06g00077 569 Pfam NPH3 family 251 484 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00077 Cca-Chr6 1903441 1909166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00077 29 567 EF-hand Containing Proteins AT3G44820 23.510 3.77e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00077 - - gmx:100785736 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00077 06 1903441 1909166 Cca06g00077 06 1903441 1909166 ECH