Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02125 ATGATACTCTGCTACAGGCGATTGTTACACAATTCCACCCCTTTAGCTTTGCCAGAGAAGTTGCTACATCACTACAACTCTTCGCACCACCACCTCCAATCTCCACCTTCACCTTTTAATTTGGAATATCATCGATACAAAGATTCTCGTAGATTAGAAGATGCCCATCATCTTCATTTACAGATCTACAAAACTGGCCTTACCAATGATGTTTTCTGGTGTAATACTCTTATCAACATATATGTTAGAGTTGGCAACTTGCTTTCAGCACATAAGCTGTTCGATGAAATGCCACATAAGAACCTCGTTTCTTGGTCTTGTTTGATTTCTGGGTATGCACAAAATGCCATGCCTCATGAGGCATGTATGCTATTCAAGGGGATCATTTCAGCTGGTCTTTTACCAAACCACTATGCTATTGGTAGTGCTCTTCGAGCATGCCAAGAGCTTGGTCCAACTAAGCTTAAACTCGGGATGGAGATTCATGGCTTAGTTTCCAAATCTCCATATGCTTCAGACATGGTGTTGTCTAATGTGCTCATCTCCATGTATTCACATTGCTCGGCTTCCATTGATGATGCTCGTCGTGTTTTTGATGAAATAAAAAACAAAACTTCTGCATCCTGGAATTCTATCATTTCGGTTTATTGTCGTAGGGGAGATGCAATTTCTGCTTTTAAGCTATTTTCAAGCATGCAAAGGGAAGCTACAGAACTTACCTGCAGGCCTAATGAATATACCTTCTGTAGCTTAGTAACTGTTGCATGCTCTCTGGTTGACTGTGGACTGACTTTGCTTGAGCAGATGGTGGCCAGGATTGAAAAATCTAGCTTTGTACAAGATCTGTATGTGGGTAGTGCATTGGTCAGTGGGTTTGCGAGGTATGGTTTAATAGATTATGCTAAACTGATTTTTGAGCAGATGTGTGATCGTAATGCAGTGACTATGAATGGGTTAATGGTTGGATTGGCAAGGCAGCACCGGGGTGAAGAAGCGGCTAAGATATTCAAGGAAATGAAAGATTTAGTTGAAATAAATGCAGTATCTTATGCGGTTCTTTTAAGTGGTTTCACTGAATTTTCAAATTTAAGGGAAGGGAAGAGAAAAGGTCAAGAGGTTCATGCTTATCTGATTCGCAATGCCTTGGTTGATGCCTGGATTTTGATTGGAAATGCACTTGTCAATATGTATGCAAAATGTGATGCCATTGGTAATGCTTGGTCTATTTTTCAACTCATGCCCAATAAAGATACTGTCTCATGGAACTCTATGATCTCTGGCCTTGACCACAACGGGCAATTTGAGGAAGCAGTGGCCTGTTTCCATACAATGAGGAGAAAGGGAATGGTGCCCTCAAAATTCTCAGTTATTAGTACTTTGAGTTCATGTGCAAGTTTGGGTTGGATCATGTTAGGACGACAGATACACAGTCAAGGGATCAAATGCGGGCTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTAACATTATATGCTGAAACTGAATATATGGATGACTGTCAGAAAGTTTTCTTTCTAATGTCAGAGTATGACCAAGTTTCTTGGAATTCTTTTATTGGTGCACTAGCAACTTCAGAGGCATCAGTTTTACAGGCTGTAAGATATTTCCTGGAGATGATGCAAGCAGGATGCAAACTCAACAGAGTAACATTTATAAATATTTTAGCTGCAGTTTCTTCTCTTTCTCTTCTTGAACTGGGCCGTCAAATTCATGCTTTAATCTTAAAATACTCTGTTGCTGATGACAATGCTATTGAGAATACGCTTCTAGCTTTCTATGGAAAATGTGAGCAGATGGAGGACTGTGAGATAATCTTTTCTAGAATGTCCGAGCGAAGAGATGAAGTCAGTTGGAATTCAATGATTTCTGGATATATACATAATGGCATCCTGCATAAGGCCATGGATTTGGTATGGTTTATGATGCAAACGGGCCAAAGATTGGATGTTTTCACGCTTGCCACTGTTCTTAGTGCCTGTGCTTCAGTTGCAACATTAGAGCGTGGTATGGAAGTTCATGCATGTGCTATAAGAGCTTGTTTAGAATCTGAAGTTGTTGTTGGTAGTGCACTAGTTGACATGTATGCAAAATGTGGAAAGATAGATTATGCATCGAGGTTCTTTGAATTGATGCCGTTGAGGAACATATATTCTTGGAATTCAATGATTTCTGGCTACGCACGCCATGGACATGGAGGAAAAGCACTACAGCTTTTTACACAGATGAAACAGCATGGCCAATTGCCAGATCAGGTAACCTTTGTTGGGGTCCTATCGGCCTGTAGTCATGTAGGGTTAGTTGATGAAGGATTTAAGCATTTCAAATCAATGGGTGAAGTATATGGACTAGCTCCTAGAATAGAGCACTTCTCTTGTATGGTGGACCTCCTTGGGCGGGCAGGTGATGTTAATAAGATACAGGACTTTATAAAAACAATGCCAATGGATCCTAATGCCCTCATTTGGAGAACAATTTTAGGAGCATGTTGTCGAGCTAATAGCCGAAATTCAGAGCTAGGGCGGATGGCTGCCAAGATGCTTATTGAGTTAGAGCCGCAGAACGCTGTGAACTATGTGCTTCTTTCTAACATGCATGCTGCTGGTGGAAAATGGGAAGATGTGGCAGAGGCTAGGTTGGCGATGAGGAATGCAGCAGCGAAGAAAGAAGCTGGGTGTAGTTGGGTCAACATGAAGGATGGAGTTCATGTGTTTGTGGCTGGAGATCAAACACACCCAGAAAAGGAACATATCTATGAAAAACTCAAGGAGATAATGAACAAAATAAGGGACGCAGGATATGTGCCTGAAACCAAATATGCACTCTATGATCTGGAGCTAGAAAACAAAGAAGAGCTCCTCAGCTATCATAGTGAGAAACTAGCAATTGCTTTTGTTCTCACTCGTAAATCTGAGCTACCAATTAGGATAATGAAGAACCTACGGGTTTGCGGTGACTGTCACACTGCTTTCAAATACATATCAAAGATTGTTAATCGACAGATAATTTTACGAGATTCAAATAGATTCCACCATTTTGATGGTGCCATATGTTCTTGTGGAGACTATTGGTGA 3093 0.408 MILCYRRLLHNSTPLALPEKLLHHYNSSHHHLQSPPSPFNLEYHRYKDSRRLEDAHHLHLQIYKTGLTNDVFWCNTLINIYVRVGNLLSAHKLFDEMPHKNLVSWSCLISGYAQNAMPHEACMLFKGIISAGLLPNHYAIGSALRACQELGPTKLKLGMEIHGLVSKSPYASDMVLSNVLISMYSHCSASIDDARRVFDEIKNKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELTCRPNEYTFCSLVTVACSLVDCGLTLLEQMVARIEKSSFVQDLYVGSALVSGFARYGLIDYAKLIFEQMCDRNAVTMNGLMVGLARQHRGEEAAKIFKEMKDLVEINAVSYAVLLSGFTEFSNLREGKRKGQEVHAYLIRNALVDAWILIGNALVNMYAKCDAIGNAWSIFQLMPNKDTVSWNSMISGLDHNGQFEEAVACFHTMRRKGMVPSKFSVISTLSSCASLGWIMLGRQIHSQGIKCGLDLDVSVSNALLTLYAETEYMDDCQKVFFLMSEYDQVSWNSFIGALATSEASVLQAVRYFLEMMQAGCKLNRVTFINILAAVSSLSLLELGRQIHALILKYSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYIHNGILHKAMDLVWFMMQTGQRLDVFTLATVLSACASVATLERGMEVHACAIRACLESEVVVGSALVDMYAKCGKIDYASRFFELMPLRNIYSWNSMISGYARHGHGGKALQLFTQMKQHGQLPDQVTFVGVLSACSHVGLVDEGFKHFKSMGEVYGLAPRIEHFSCMVDLLGRAGDVNKIQDFIKTMPMDPNALIWRTILGACCRANSRNSELGRMAAKMLIELEPQNAVNYVLLSNMHAAGGKWEDVAEARLAMRNAAAKKEAGCSWVNMKDGVHVFVAGDQTHPEKEHIYEKLKEIMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVNRQIILRDSNRFHHFDGAICSCGDYW 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat 594 619 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat 74 101 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat 314 341 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat 623 649 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat 286 311 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat 103 132 IPR002885 -
Cca05g02125 1030 Pfam E motif 843 903 IPR046848 -
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 100 IPR002885 -
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 553 IPR002885 -
Cca05g02125 1030 Pfam E+ motif 908 935 IPR046849 -
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Cca05g02125 1030 Gene3D Tetratricopeptide repeat domain 699 923 IPR011990 GO:0005515
Cca05g02125 1030 Gene3D Tetratricopeptide repeat domain 531 683 IPR011990 GO:0005515
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Cca05g02125 1030 Pfam DYW family of nucleic acid deaminases 939 1030 IPR032867 GO:0008270
Cca05g02125 1030 TIGRFAM PPR: pentatricopeptide repeat domain 74 101 IPR002885 -
Cca05g02125 1030 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Cca05g02125 1030 TIGRFAM PPR: pentatricopeptide repeat domain 314 341 IPR002885 -
Cca05g02125 1030 TIGRFAM PPR: pentatricopeptide repeat domain 724 757 IPR002885 -
Cca05g02125 1030 TIGRFAM PPR: pentatricopeptide repeat domain 208 235 IPR002885 -
Cca05g02125 1030 TIGRFAM PPR: pentatricopeptide repeat domain 103 136 IPR002885 -
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Cca05g02125 1030 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 342 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat family 416 464 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat family 722 769 IPR002885 -
Cca05g02125 1030 Pfam PPR repeat family 205 256 IPR002885 -
Cca05g02125 1030 PANTHER OS01G0913400 PROTEIN-RELATED 588 973 - -
Cca05g02125 1030 PANTHER OS01G0913400 PROTEIN-RELATED 132 235 - -
Cca05g02125 1030 PANTHER OS01G0913400 PROTEIN-RELATED 55 154 - -
Cca05g02125 1030 PANTHER OS01G0913400 PROTEIN-RELATED 239 489 - -
Cca05g02125 1030 PANTHER OS01G0913400 PROTEIN-RELATED 487 586 - -
Cca05g02125 1030 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 487 586 - -
Cca05g02125 1030 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 239 489 - -
Cca05g02125 1030 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 132 235 - -
Cca05g02125 1030 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 55 154 - -
Cca05g02125 1030 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 588 973 - -
Cca05g02125 1030 Gene3D Tetratricopeptide repeat domain 156 258 IPR011990 GO:0005515
Cca05g02125 1030 Gene3D Tetratricopeptide repeat domain 373 471 IPR011990 GO:0005515
Cca05g02125 1030 Gene3D Tetratricopeptide repeat domain 20 155 IPR011990 GO:0005515
Cca05g02125 1030 Gene3D Tetratricopeptide repeat domain 259 372 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02125 Cca-Chr5 40958598 40961690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02125 58 757 Glycoside Hydrolase AT3G49170 25.375 6.43e-51 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02125 - - gmx:100800858 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02125 05 40958598 40961690 Cca05g02125 05 40958598 40961690 ECH