Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02122 ATGAATTCTctcctcctaccccttctgctcctccttctcaccaccaccaccaccgccaccgcgcacaacATAACCCGCATTCTGGCCAAGCACCCAGAATTCTCCACCTTCAACCACTACCTCACAGTCACCCACCTCGCCGGAGAAATAAACCGGAGGCAGACCATAACGGTCCTGGCCATCGACAACGCGGCCATGTCCTCCCTGCTGGACAAGCACCTCACCCTCCCCACTCTCAAGAACGTCCTCTCCCTCCACGTCCTCGTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATAAACAACTCCACCACCCTCGTCTCCTCCATGTTCCAGGCCACCGGCGCCGCCGCTGGCACTGCCGGCTACGTCAACATCACCAACCTGAAGGGAGGGAAGGTGGGGTTCGCGGCGGAGGACAACGACGGCGCCCTCCACTCGTTCTACGTAAAGTCGGTGCAGGAAGTGCCGTACTACATCTCGGTCCTCCAAATCAGCCACGCCATCAGCTCGGCCGACGCGGAGGCCCCCACGGCGGCCCCGTCGGCCATCGATCTGATATCGATCATGTCGAAACAAGGGTGCAAGGCCTTCGCCGACCTCCTCAGGGGCTCCAAGGCCCTCCCCACTTTCAAGGAAAACATCGACGGCGGCTTAACCGTCTTCTGCCCCTCGGACGCCGCCGTTAGCGGTTTCGCTCCGAAATACAAGAACCTGAGCGACGGTGAGAAAGTGTCGCTTCTCTTATATCACGGCGTCCCCGTTTACCAGTCCCTGCAGACGCTGAAATCGAGCAATGGCCTCGTGAACACCCTGGCCACGGAAGGAGCGAACAAGTACGATTTGACCGTTCAGACTCAAGGCGAAGACGTTGCCCTTAAGACCAAGGTTAACACAGCGACCATTGTGGGAACTCTGATAGATCAGGATCCATTTGTGGCTTACAAGATAAACAAGGTGTTGATGCCGCGAGAGTTGTTCAAGGAGAGTGGAGAAGCGCCGGCGGAGTCACCCAAGGCTGCCAAGAAGAAGAAGGGCAGTAAGAAGGGAGCTGATGATTCCGAGGCGGCGGATGGGCCGGCGGATGCCCCATCAGACGACTCGGAGGACCAGAAGGCTGCGGATGAGAACAGCAATGGGGTAAGTGTAAGTGGGTTGCAGGACGCCGTCACAATGCTCTTCACTTTGCTCATCGGATTTTTGGTTCTAATTCTATCATCATGA 1224 0.5441 MNSLLLPLLLLLLTTTTTATAHNITRILAKHPEFSTFNHYLTVTHLAGEINRRQTITVLAIDNAAMSSLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTAGYVNITNLKGGKVGFAAEDNDGALHSFYVKSVQEVPYYISVLQISHAISSADAEAPTAAPSAIDLISIMSKQGCKAFADLLRGSKALPTFKENIDGGLTVFCPSDAAVSGFAPKYKNLSDGEKVSLLLYHGVPVYQSLQTLKSSNGLVNTLATEGANKYDLTVQTQGEDVALKTKVNTATIVGTLIDQDPFVAYKINKVLMPRELFKESGEAPAESPKAAKKKKGSKKGADDSEAADGPADAPSDDSEDQKAADENSNGVSVSGLQDAVTMLFTLLIGFLVLILSS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02122 407 ProSiteProfiles FAS1/BIgH3 domain profile. 21 188 IPR000782 -
Cca05g02122 407 ProSiteProfiles FAS1/BIgH3 domain profile. 182 321 IPR000782 -
Cca05g02122 407 MobiDBLite consensus disorder prediction 329 356 - -
Cca05g02122 407 Gene3D FAS1 domain 162 324 IPR036378 -
Cca05g02122 407 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 4 401 - -
Cca05g02122 407 SMART fasc_3 220 324 IPR000782 -
Cca05g02122 407 Pfam Fasciclin domain 195 323 IPR000782 -
Cca05g02122 407 Pfam Fasciclin domain 32 106 IPR000782 -
Cca05g02122 407 Gene3D FAS1 domain 20 154 IPR036378 -
Cca05g02122 407 MobiDBLite consensus disorder prediction 329 381 - -
Cca05g02122 407 SUPERFAMILY FAS1 domain 27 140 IPR036378 -
Cca05g02122 407 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 401 IPR033254 -
Cca05g02122 407 SUPERFAMILY FAS1 domain 180 324 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02122 Cca-Chr5 40941471 40943479 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02122 - - gmx:100805178 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02122 05 40941471 40943479 Cca05g02122 05 40941471 40943479 ECH