Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02121 ATGGAAGTAGAAAGGATTGAATTGCTTAGTGGAGTTGAGGATCAATATGGAGGAGTCGTTGTAAACATCGAGGACCCTATGGATTCTATGCTCTTCTCCTCTATATTGGAAGCTTCAATTTTCAATTGGAGGCAACAGGGAAAGAAGGGGGTCTGGATCAAACTACCTATACAGCATTCAAATCTTGTCGATTCAGCGGTCAAGTCTGGATTTAGGTATCACCATGCTGAGCCAGATTACTTGATGCTTGTACGTTGGATTCCAGATACTCCTGATACCCTTCCTGCAAATGCTTCTCATCGCATCGGTGTTGGTGCTTTTGTCCTTAACAACAACAAGGAGGTGCTTGTGGTTCAGGAAATCGGTGGCAAATTCGGAGGCACAGGTGTATGGAAGATGCCTACAGGAGCTGTTAATGAAGGTGAGGATATTTGTGATGCTGCAGTCAGAGAAGTCAAAGAAGAGACAGGGATAGAGACAAAGTTTGTTGAGGTTTTAGCATTCAGGGAAAGCCATAAGTCGTTCTTCGAGAAATCAGATTTGTTCTGTCTTTGTCTGTTGCAACCTCAATCGTTTGAAATTCAGAATCAGGTTTCAGAAATTGTGGCAGCTAAGTGGATGCCTTTTGAAGATTATGCTGCCCAGCCTTTTATGCAAGACAATGAGCTCTTTAACTTAACTACAAAAATATGTTTTTCAAAGTTGGATGGCAACTACACTGGTTTCTCTACCGTGCGTACTTGTACATCTTCTGGCAAAAAGACCTATCTCTACTTTAACAACCGGGATGCTAACCATTTGTTAGCTTCCAAACAGGAACAAGCTTGA 828 0.4215 MEVERIELLSGVEDQYGGVVVNIEDPMDSMLFSSILEASIFNWRQQGKKGVWIKLPIQHSNLVDSAVKSGFRYHHAEPDYLMLVRWIPDTPDTLPANASHRIGVGAFVLNNNKEVLVVQEIGGKFGGTGVWKMPTGAVNEGEDICDAAVREVKEETGIETKFVEVLAFRESHKSFFEKSDLFCLCLLQPQSFEIQNQVSEIVAAKWMPFEDYAAQPFMQDNELFNLTTKICFSKLDGNYTGFSTVRTCTSSGKKTYLYFNNRDANHLLASKQEQA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02121 275 PANTHER NUDIX HYDROLASE RELATED 6 269 IPR003293 -
Cca05g02121 275 Pfam Nudix hydrolase domain 9 87 IPR040618 -
Cca05g02121 275 Gene3D - 6 92 - -
Cca05g02121 275 ProSiteProfiles Nudix hydrolase domain profile. 99 231 IPR000086 -
Cca05g02121 275 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 101 232 - -
Cca05g02121 275 ProSitePatterns Nudix box signature. 136 157 IPR020084 GO:0016787
Cca05g02121 275 SUPERFAMILY Nudix 67 221 IPR015797 -
Cca05g02121 275 PANTHER NUDIX FAMILY HYDROLASE 6 269 - -
Cca05g02121 275 Pfam NUDIX domain 100 218 IPR000086 -
Cca05g02121 275 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 59 77 IPR003293 -
Cca05g02121 275 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 81 97 IPR003293 -
Cca05g02121 275 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 97 115 IPR003293 -
Cca05g02121 275 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 185 209 IPR003293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02121 Cca-Chr5 40936944 40941227 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02121 - - gmx:100818821 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02121 05 40936944 40941227 Cca05g02121 05 40936944 40941227 ECH