Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02085 ATGCACAGACTCTCTACTCGCTCTTCCTTACTTCGCTATGGCGGCGGCGCGCTTCGCCGTCACGTCATCGCTCCCGTTTCCTCTTCTCACTTAACTACGGTTGGAGAGAATGACACCAGAGCTAGACGGTTTTCTATTCTGAGCACAATTGAATCCACGTATCGTCCAAATTTAAAGAGAGATTTGTTTTTGGGAAAACGATATGAATCAACCGCTGCGGAATCTTCTGCGTCCACTTCCCCACCGGCTGAGAGATATGAGTACCAAGCTGAGGTTAGTCGCCTCATGGACCTTATTGTTAACAGTTTATACAGTAACAAGGAAGTGTTTCTTAGGGAGCTTATCAGCAATGCAAGTGATGCTTTGGATAAGCTGCGGTTTCTGAGTGTAACAGAGCCTGGATTGTTGAAGGATGCAGTTGATTTTGATATTCGGATTCAAGCTGATAAGGATAATGGAATCATCACTATTACTGATACAGGCATTGGCATGACTAGGCAAGAACTAGTCGATTGTCTTGGAACAATTGCTCAAAGTGGAACTGCCAAGTTTTTGAAGGCTTTAAAGGATAGCAAGGATGCTGGTGGTGACAACAACTTAATTGGTCAATTTGGTGTCGGATTTTATTCTGCTTTTCTGGTTTCTGATCGGGTGGTAGTCTCAACAAAGAGTCCAAAATCTGATAAGCAATATGTTTGGGAAGGAGAGGCAAATGCTAGCTCATATACCATAACTGAAGAGACAGATCCTGAGAAGCTGATTCCAAGAGGAACTCGCCTTACACTACATCTTAAGAGGGATGACAAAGGTTTTGCACATCCAGAGAGGATTGAGAAGCTTGTGAAAAACTATTCACAATTTGTCTCATTCCCTATATACACTTGGCAGGAAAAGGGATACACCAAAGAAGTAGAAGTCGATGAGGATCCAGCTGAAGCCAAAAAGGATGATCAAGATGAGAAGACTGAGAAAAAGAAGAAAACTAAAACTGTTGTTGAGCGGTACTGGGATTGGGAGCTGATAAATGAAACCCAACCAATCTGGCTTCGTAATCCTAAGGAAGTCACAAAGGAGGAGTACAACGAATTCTACAAGAAAACTTTTAATGAATACCTGGAACCATTAGCATCCTCGCACTTTACCACAGAGGGTGAGGTAGAATTTAGATCTATACTTTATGTTCCTGCCTTTGCTCCGTCAGGGAAGGATGACATAATCAATCCCAAGACCAAGAATATAAGACTATACGTGAAAAGAGTGTTCATTTCAGATGACTTTGATGGAGAACTGTTCCCTCGATACTTAAGCTTTGTCAAAGGTGTTGTTGACTCAAATGACCTTCCACTCAATGTGTCACGTGAAATTCTTCAAGAGAGCCGCATAGTGCGGATTATGAGGAAACGTTTAGTTCGGAAAGCTTTTGACATGATTCTGGGAATATCCATGAGCGAGAACAGAGAGGACTATGATAAGTTCTGGGAGAACTTTGGTAAACACTTGAAATTGGGTTGCATCGAAGACCGTGAGAATCACAAACGAATTGCTCCATTGCTTCGTTTTGTCTCATCCCAAAGTGATGAAGATCTGATCAGCTTGGATGAATATGTTGAGAACATGAAACCTGATCAAAAGGATATTTATTACATTGCTGCTGACAGTGTGACCAGTGCAAAGAACACACCTTTCTTGGAGAGACTTGCGGAGAAGGATATTGAAGTGCTGTTTTTGGTGGATCCAATAGATGAGGTTGCCGTTCAAAACCTTAAATCATACAAGGAAAAGAATTTTGTTGACATTAGCAAGGAAGACTTGGATCTAGGTGATAAGAATGAGGAAAGGGAAAAGGAAATGAAGCAGGAATTTGGCCAAACATGTGACTGGATCAAGAAACGATTGGGAGATAAGGTTGCAAGTGTGCAAATTTCAAACCGGCTTAGCTCTTCCCCTTGTGTTCTGGCGTCTGGAAAATTTGGTTGGTCTGCAAACATGGAGAGGCTGATGAAGGCACAAAGTATGGGGGATGCATCCAGCTTGGAATTCATGAGGAGCAGAAGGGTGTTTGAGATCAACCCTGACCATTCTATTATCAGGAATTTGGATGCTGCATTCAAAACAAATCCCGACGATGAAGATGCCCTCAGAGCCATTGATCTTTTGTATGATGCTGCTTTGGTTTCAAGTGGTTTCACGCCTGATAATCCAGCTCAACTTGGAGGGAAGATATACGAGATGATGGGTATGGCTCTCACTGGTAAATGGTCAACACCTGGTCAGTTCCAGTCCACTGAAACTCAGCCACATTCCCCAGAAACTGTAGAAGCTGAGGTGGTTGAACCTACGGAGGCTGGCAGTCAGAAGTGA 2361 0.4282 MHRLSTRSSLLRYGGGALRRHVIAPVSSSHLTTVGENDTRARRFSILSTIESTYRPNLKRDLFLGKRYESTAAESSASTSPPAERYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRFLSVTEPGLLKDAVDFDIRIQADKDNGIITITDTGIGMTRQELVDCLGTIAQSGTAKFLKALKDSKDAGGDNNLIGQFGVGFYSAFLVSDRVVVSTKSPKSDKQYVWEGEANASSYTITEETDPEKLIPRGTRLTLHLKRDDKGFAHPERIEKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAEAKKDDQDEKTEKKKKTKTVVERYWDWELINETQPIWLRNPKEVTKEEYNEFYKKTFNEYLEPLASSHFTTEGEVEFRSILYVPAFAPSGKDDIINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENREDYDKFWENFGKHLKLGCIEDRENHKRIAPLLRFVSSQSDEDLISLDEYVENMKPDQKDIYYIAADSVTSAKNTPFLERLAEKDIEVLFLVDPIDEVAVQNLKSYKEKNFVDISKEDLDLGDKNEEREKEMKQEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLASGKFGWSANMERLMKAQSMGDASSLEFMRSRRVFEINPDHSIIRNLDAAFKTNPDDEDALRAIDLLYDAALVSSGFTPDNPAQLGGKIYEMMGMALTGKWSTPGQFQSTETQPHSPETVEAEVVEPTEAGSQK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02085 786 MobiDBLite consensus disorder prediction 754 769 - -
Cca05g02085 786 MobiDBLite consensus disorder prediction 754 786 - -
Cca05g02085 786 MobiDBLite consensus disorder prediction 304 324 - -
Cca05g02085 786 Gene3D - 342 514 - -
Cca05g02085 786 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 84 298 IPR036890 -
Cca05g02085 786 PIRSF HSP90_HTPG 57 785 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g02085 786 SUPERFAMILY Ribosomal protein S5 domain 2-like 344 602 IPR020568 -
Cca05g02085 786 Gene3D - 515 601 - -
Cca05g02085 786 Gene3D - 602 749 IPR037196 -
Cca05g02085 786 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 56 783 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g02085 786 CDD HATPase_Hsp90-like 93 288 - -
Cca05g02085 786 SUPERFAMILY HSP90 C-terminal domain 625 745 IPR037196 -
Cca05g02085 786 PANTHER BNAA05G29880D PROTEIN 56 783 - -
Cca05g02085 786 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 106 266 IPR003594 -
Cca05g02085 786 Gene3D - 70 313 IPR036890 -
Cca05g02085 786 Pfam Hsp90 protein 271 755 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g02085 786 Hamap Chaperone protein HtpG [htpG]. 81 746 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 84 104 IPR020575 -
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 105 127 IPR020575 -
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 154 171 IPR020575 -
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 172 189 IPR020575 -
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 201 223 IPR020575 -
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 256 273 IPR020575 -
Cca05g02085 786 PRINTS 90kDa heat shock protein signature 274 292 IPR020575 -
Cca05g02085 786 ProSitePatterns Heat shock hsp90 proteins family signature. 104 113 IPR019805 GO:0005524|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02085 Cca-Chr5 40651369 40657444 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02085 K09487 - gmx:100806710 1396.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02085 05 40651369 40657444 Cca05g02085 05 40651369 40657444 ECH