Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02060 atgacaaattccgGTATATCTGTTGCAGATGGCAAGTTGATGGTGTTGGGGAAGAAGGTGCTGAGTGAGGTCCATGATAACATTCTTGTAACCCCTGCTTCTGGGGGTGCTTTGCTCAATGGGGCTTTCATTGGAGTTGCGTCCCATCACAAGGGTAGCCGCAAAGTTTTCCCAATTGGCAAACTTGAGGGGTTGCGGTTTATGTGTGTTTTCCGGTTCAAGATGTGGTGGATGACGCAGAGAATGGGCTCTTGTGGACAAGAAGTCCCCATTGAGACACAGTTCTTGCTTGTTGAATCAAACAGTGGCTCTGATATTGATGGAGGAGAGGATCATGCTACCTATACTGTTTTCTTGCCCCTTCTGGAGGGAGATTTCAGGGCAGTTCTTCAGGGGAATGATCAAAACGAGATTGAGATCTGTGTGGAAAGTGGTTGTCCTGCTGTGGAGGAATTTGATGGGACTCATCTGGTATTTGTTGGGGCTGGATCAGATCCTTATGAAGTCATAACAAATGCTGTCAAGACTGTTGAGAAACATTTACAGACCTTTGCTCACCGCGAGCGAAAGAAGATGCCAGATATGTTGAACTGGTTTGGATGGTGTACATGGGATGCTTTCTACACTAATGTGACTTCAGAGAATGTGAAGCAAGGATTACAAAGCTTTGAGAAAGGTGGAATTCCTGCTAAGTTTGTAATAATTGATGATGGATGGCAATCTGTTGGCATGGACCCTAATGGTATTGAATGGAAATCTGATACTTCAGCCAACTTTGCAAATCGCTTAACAAACATCAAAGAGAATCACAAGTTCCAGAAAGATGGCAAGGAAGGTCAGCGGGTAGAGGACCCAGCTCTGGGAATAAGGCATATTACTAATGAAATCAAACTAGAGCATGATATAAAGTACGTATATGTGTGGCATGCAATAACAGGATATTGGGGTGGTGTTAAACCCGGGGTTTCAGGTATGGAGCACTATGAGTCAAAGATGGCCTTCCCTGTCTCATCTCCTGGAGTTGACTCGAATCAACCAGATGAAGCTTTGACAACCATTGCCATGAATGGACTTGGCCTAGTGAATCCTGAGAAAGTTTTTCACTTTTATGATGAACTCCATTCATATTTGGCATCCGCTGGTATTGATGGTGTCAAAGTTGATGTTCAGAATATCCTTGAAACTCTTGGAGCAGGACATGGTGGGAGGGTGAAACTTGCAAGGAAATACCACCAGGCATTAGAGGCATCAATCTCTAGAAACTTCCCTGATAATGGAATCATTTGTTGCATGAGTCACAACACAGATGGATTGTACAGTGCAAAGCGTTCTGCTGTTATTAGGGCATCAGATGATTTCTGGCCAAGAGACCCTGCATCTCACACGATTCACATTGCATCAGTGGCTTATAATACTATTTTCCTTGGTGAATTTATGCAGCCAGATTGGGATATGTTTCATAGCCTACATCCAATGGCTGAATATCATGGTGCAGCACGAGCAGTTGGGGGATGTCCTATTTATGTTAGTGACAAGCCTGGACATCATGACTTTAATCTTTTGAAGAAGCTTGCACTACCTGATGGTTCTATATTAAGGGCTAAACTTCCAGGAAGACCAACAAAGGATTGCTTATTTACTGATCCTGCTAGAGATGGAAAGAGGTAA 1668 0.4323 MTNSGISVADGKLMVLGKKVLSEVHDNILVTPASGGALLNGAFIGVASHHKGSRKVFPIGKLEGLRFMCVFRFKMWWMTQRMGSCGQEVPIETQFLLVESNSGSDIDGGEDHATYTVFLPLLEGDFRAVLQGNDQNEIEICVESGCPAVEEFDGTHLVFVGAGSDPYEVITNAVKTVEKHLQTFAHRERKKMPDMLNWFGWCTWDAFYTNVTSENVKQGLQSFEKGGIPAKFVIIDDGWQSVGMDPNGIEWKSDTSANFANRLTNIKENHKFQKDGKEGQRVEDPALGIRHITNEIKLEHDIKYVYVWHAITGYWGGVKPGVSGMEHYESKMAFPVSSPGVDSNQPDEALTTIAMNGLGLVNPEKVFHFYDELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASISRNFPDNGIICCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCPIYVSDKPGHHDFNLLKKLALPDGSILRAKLPGRPTKDCLFTDPARDGKR 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02060 555 Pfam Raffinose synthase or seed imbibition protein Sip1 6 554 IPR008811 -
Cca05g02060 555 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED 3 554 - -
Cca05g02060 555 PANTHER - 3 554 IPR008811 -
Cca05g02060 555 Gene3D Aldolase class I 190 522 IPR013785 -
Cca05g02060 555 SUPERFAMILY (Trans)glycosidases 193 524 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02060 Cca-Chr5 40343530 40351593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02060 4 554 Glycoside Hydrolase AT1G55740 76.588 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02060 K06617 - gmx:100785506 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02060 05 40343530 40351593 Cca05g02060 05 40343530 40351593 ECH