Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02048 ATGTTAACCGTTCCAGAACCACCATCCAGGAAGAAAACATGCAAGGATCAAGCCACAAAAACAGATGACCCTGAGAATTCTGTCACCTTTGTTTATCAGACCAAAGTAGCAGAATCATTACGATGTGTAACAGTTTCATGGTGCAAGAACCCCACAGACCATTTCCTTTCCATGAGCGTGGAGAACACCTTGGAAGAAAACAAGTACACCTGCAAGATTGATTTGGAATCAGGGCAGTCTTGGGGGAAAAAGGGTCTTAGATCCTTTGAAATACAAGGTGCAAGAGTAGACATTTTCTGGGATCTTCGGAAGGCGAAATTCAACACAAGTCCACAACCATGCTCAGGTTATTACGTTGCCTTGGTGTACAAGAAAGAGGTGCTTTTGTTATTGGGGGATTTGGAGAACGATGCTTATGATAGAACCAAATCAAAACCATCCCCTGAAGAGGCTACCTTGTTGTGCAAGAGAGACAATGTGTATGGTAAGAAGCTGTTTTGCACCAGAGCCATTCTGGAAGATGGTAATAGTAAGACAGAACATGATGTTGTGATTGAGACTTCCCTTTGTGGGCCTGATGATCCAGAAATGTGGATTAGCATAGATGGGATGTTGGCCAGTAGAATAATGAACTTGCATTGGAGATTCAGGGGGAATGAAATAGTGATGGTTAATAATTTGCCTGTGCAAATATTTTGGGATGTGCATGATTGGCTCTTCAATGACCTTGGTTCTGGCCCTGCCTTCTTTGTTTTCAAGCCAGGTTTTGTGGAAACGACTAGTGATTCTAATGGCAGAGAATGCTCAGGAAGAAGCGGGGGTAGCAGCATGTGTGAATTGCTAGAGGAGAATCCATCCTCCAAAGGTTTCGCGGGAAACATCGGATTCAAAATCTCATGCCACCTTCCCTCCCGCGTTTTTTCAATTCCCCGGATCATTTGGAAGTCACAAATTGTGTGCCTGAAGAGTAGAGACTTTAGTTCTTCCGTTCCTGTTAGGTACATTTCTAGCAGGGTGAAAATACCTGAAACTTCTCTGCCACTGAAAAGCCTAGGATATTGCAGCTGTCCTGATGTTAATGTGCTCAAGATAAATGGTGGAAAAGATATGTATGCAACAATTGCACATTGTGAAGCTTCTCAAGATCAAAATGAAATTTGCCCTGATTTATTATTTGATGACACTGAAGAAGGTTCTTTTGATCAAGTGGAAGATGTTGGAGAGTTGACAATCGATCAGGGAGGACACTCTGGTGACCAAGATATGATTCCAATTGATAAATTTACTAGTGATGTTGAGGAGTCTGCTATTAAATTACTTGCAGCTAAGGCACTCACAACACTTGAGTTGAAAAAGAAATTGCTTGGAAAGAGATTCTCTCCTAATGCAGTTGAGGCAGTGATAAACAAGTTCCAGAGAAGAGGGTATATCAATGATAGGTTGTATGCTGAAACATTTTCCCAAGCTAGATGGTCTTCGTCAAGTTGGGGGCCATGGCGTATCAAACAAGCACTGTTCAAGAAGGGAGTTAGTCAAGCTGATGCTGAGAAGGCAGTTGAATTGGTCTTCAAGGACAATGATTGTGCTGAAGATAACAAGTCAGTCATTGGCTTGTCAAAACATTCCATGGATCATCTTTATGCGCAGGCCTCAAAGCAGTGGTTCAGAGGTCAGAATGTACCCAAGGAGACAAGAAAAGCAAGAATTGTTAGGTGGCTTCAGTATCGTGGTTTTGACTGGAATGTCATTAACTTCATATTAAAGAAATTAGACAAACAGGACCAGAATTCTCCATAG 1797 0.4201 MLTVPEPPSRKKTCKDQATKTDDPENSVTFVYQTKVAESLRCVTVSWCKNPTDHFLSMSVENTLEENKYTCKIDLESGQSWGKKGLRSFEIQGARVDIFWDLRKAKFNTSPQPCSGYYVALVYKKEVLLLLGDLENDAYDRTKSKPSPEEATLLCKRDNVYGKKLFCTRAILEDGNSKTEHDVVIETSLCGPDDPEMWISIDGMLASRIMNLHWRFRGNEIVMVNNLPVQIFWDVHDWLFNDLGSGPAFFVFKPGFVETTSDSNGRECSGRSGGSSMCELLEENPSSKGFAGNIGFKISCHLPSRVFSIPRIIWKSQIVCLKSRDFSSSVPVRYISSRVKIPETSLPLKSLGYCSCPDVNVLKINGGKDMYATIAHCEASQDQNEICPDLLFDDTEEGSFDQVEDVGELTIDQGGHSGDQDMIPIDKFTSDVEESAIKLLAAKALTTLELKKKLLGKRFSPNAVEAVINKFQRRGYINDRLYAETFSQARWSSSSWGPWRIKQALFKKGVSQADAEKAVELVFKDNDCAEDNKSVIGLSKHSMDHLYAQASKQWFRGQNVPKETRKARIVRWLQYRGFDWNVINFILKKLDKQDQNSP 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02048 598 Pfam Plant protein of unknown function (DUF868) 25 263 IPR008586 -
Cca05g02048 598 Gene3D - 433 476 IPR036388 -
Cca05g02048 598 PANTHER EXPRESSED PROTEIN 5 290 IPR008586 -
Cca05g02048 598 Hamap Regulatory protein RecX [recX]. 418 594 IPR003783 GO:0006282
Cca05g02048 598 Pfam RecX family 457 589 IPR003783 GO:0006282
Cca05g02048 598 PANTHER KINESIN-LIKE PROTEIN (DUF868) 5 290 - -
Cca05g02048 598 Gene3D - 478 521 IPR036388 -
Cca05g02048 598 Gene3D - 540 597 IPR036388 -
Cca05g02048 598 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02048 Cca-Chr5 40238640 40247405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02048 23 253 EF-hand Containing Proteins AT3G04860 36.170 5.77e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02048 - - gmx:100783629 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02048 05 40238640 40247405 Cca05g02048 05 40238640 40247405 ECH