Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02041 ATGAGCGGCGGTGGTGGGTCTTCCAGTTTTAGGGTTCCGATCCCAAACAATGTGCGCAAAATCATCCAAGACATTCGTGAGATCACCGGCAAGCAGCACACCGACGACGAAATCTACGCCGTCCTCCGAGAATGCTCCATGGATCCCAATGAGACCGCTCAGAAGCTTCTCTATCTAGATACTTTTCATGAGGTAAAGAGGAGACGTGACAGAAAGAAGGAGGGATTAACCAGCAGGGCTTCTGACGAGTCTAGGTTAAAGCAAGGTGGACAAGGGAGGGGGGGAAGGGGTGCTTCTGGAGGACATTCCTCTAACTTTCCTGATGGTGGTGGTGGGAGGAACCTAGCTAATCGAAGGGAAAATGGAGTCAGTCACATTGCAGAGAGAAGTCATGCTCCCCCTACTCAGTCAGTTTTGCAGAAAACCAAGACTAATACATCTCAAGCTACAAGAGTTTCAGCTGCTGCATCCCATGGTGCTGCAAATCAATCCAATGGAAAGTCGGGTCACGGTTCTGCTGGCCAATCTCCCATAGTTAGTGTACCTAAAAGTAGTTCAGCTTCTAATGACATTGGCTATCAAGAAAATGTTGAACCTCAAGCTGTTGTTGTTGCAGCAGCCTCTTCCCCTACTCAAACCTTTAGCTCAGTTACCAGTACCAACCAAGGAAAGTCTCTGTCAAGTTCTGATCAACTTCAAACTTCTGTATCCAGTGTCCATTCCTCTTTGGATCCTGTAGTAGCATCATCTGTCTCCAGGAATCCAGGTGTCAGTGGTGCTATTAGTTGGGAAGTTGGGAGCAACCAGATATCTGCTGGACCAAATCATGTTAAAGGAAATACAGTTGTTGTTTCTGAAGTTAATGATTTATCAGCATCCAATAATGAAAAATCTGGGTCCGTGAATTCAATGTGCAAAACAAATGCCCCACAGAAGTCAAATGAAGTTAAAAATAATTGGTTATCTGAATCCTCACAACTGTCATCTCCATCATCCCCAAATGATTCATTGAGGCCATCTTCCAGTTCTGGTAGCCAGCCACCACTAGCTAATATCACAGAGGTTTCAACTTCAGAAGCTTGTGTGGTGCAATCTTCATCAGAATTGAGGCAACATGTTACTTTTCCAAACCATTTCCAAGTACCCAAGGCTTTAAAAAGTGGTCTGACATTTGGAAGCTTTGATACTTTTGGCCCAAGTGAAAAATCTAACAGTGGAACTGGTGGTGAAAATAACACTTCTGCTCTTGAATCTTCACTAGGAAGTGGCGAAGCTGCAACTTCAAGCAATCAAAGTGCATCATTGACTGCACAAGGAGATCATCTTGATTATCCACATTCGACATCTTATTTGATTGAAAAGACACCAGCTACAGAAGGCAATTCTATATCTGGTACTGACACAAAGGTTGATCAGCCAAAGGAGATTTTGTTGGCTCCTGAAGGCCATCAAATTCCAACTGTTCAAACTGCTCAAAACTATGGTTTGAATTTCATGTCCACCATGTTAGGCACTCAGCAAGTTCAATTTGAGGGAACTGAGCCTCAGTCACAAGATACATCTCGTTTTCCCAACTTTGTTAACGCAAGTTCTCAGGCTGTATCCCCTAGCCCAACTCCACCCCTGCAGAGTTCTATACCTGTGTCTCCACAGTCAGTTTCTATTTTCAGGCCACCACCATACCCTACTAACTTCTTCCCTTATAGCCACTATTACCCTCCAATTTATGTGTCTCCCATACACCAATTTTTAAGCCACAATGGTTTCCCTCAACAGCCATCAGCTGGCAACATGTATCTTCCAGCAGCTGCTGGGATCAAATTCCCTCTCCCTCAATTCAAGGCAGGAGCAAACACAGGAAATGCAGCTCATATTGGAATTCCTTCCGGATCATTTATCGCTCCCCCAGTAGGATATGCACCTAGTCCAACAGTTAACACTGGAAGCTCCACTGGAAATGAAGATCTTGCAGTGTCTCAGTTAAAGGAAAACCAGATCTATACAACAGGGCAGCTGAGTGAAGGCTCTGCAGTGTGGATACCTGCACCTGGCCAAGACTTATCTAGTTTGCAAGTTAATTCTCTGTATAACCTTGCCCCTCAGGGACAACATCTCACCTTTCCCCCAACACAGGCTGCTCATGGGGCATTTGCAGGCATCTATCAAGCAGGGCAGACAGTAGCTACACCATCAACGCTTTTGCAACAATCTCAGGCTGTAGCTGGGCCAGTTGAAACTGTAGGGCCCCCTTCAGGATCCTATCAGCAGCCTCAGCCTGCACCGATCAATTGGAACTCTAATTTTTAG 2307 0.4525 MSGGGGSSSFRVPIPNNVRKIIQDIREITGKQHTDDEIYAVLRECSMDPNETAQKLLYLDTFHEVKRRRDRKKEGLTSRASDESRLKQGGQGRGGRGASGGHSSNFPDGGGGRNLANRRENGVSHIAERSHAPPTQSVLQKTKTNTSQATRVSAAASHGAANQSNGKSGHGSAGQSPIVSVPKSSSASNDIGYQENVEPQAVVVAAASSPTQTFSSVTSTNQGKSLSSSDQLQTSVSSVHSSLDPVVASSVSRNPGVSGAISWEVGSNQISAGPNHVKGNTVVVSEVNDLSASNNEKSGSVNSMCKTNAPQKSNEVKNNWLSESSQLSSPSSPNDSLRPSSSSGSQPPLANITEVSTSEACVVQSSSELRQHVTFPNHFQVPKALKSGLTFGSFDTFGPSEKSNSGTGGENNTSALESSLGSGEAATSSNQSASLTAQGDHLDYPHSTSYLIEKTPATEGNSISGTDTKVDQPKEILLAPEGHQIPTVQTAQNYGLNFMSTMLGTQQVQFEGTEPQSQDTSRFPNFVNASSQAVSPSPTPPLQSSIPVSPQSVSIFRPPPYPTNFFPYSHYYPPIYVSPIHQFLSHNGFPQQPSAGNMYLPAAAGIKFPLPQFKAGANTGNAAHIGIPSGSFIAPPVGYAPSPTVNTGSSTGNEDLAVSQLKENQIYTTGQLSEGSAVWIPAPGQDLSSLQVNSLYNLAPQGQHLTFPPTQAAHGAFAGIYQAGQTVATPSTLLQQSQAVAGPVETVGPPSGSYQQPQPAPINWNSNF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02041 768 SUPERFAMILY UBA-like 14 75 IPR009060 GO:0005515
Cca05g02041 768 MobiDBLite consensus disorder prediction 749 768 - -
Cca05g02041 768 MobiDBLite consensus disorder prediction 743 768 - -
Cca05g02041 768 MobiDBLite consensus disorder prediction 400 444 - -
Cca05g02041 768 PANTHER FLOCCULATION PROTEIN (DUF1296) 2 768 IPR044277 -
Cca05g02041 768 MobiDBLite consensus disorder prediction 67 191 - -
Cca05g02041 768 PANTHER GBF-INTERACTING PROTEIN 1-LIKE 2 768 - -
Cca05g02041 768 MobiDBLite consensus disorder prediction 213 233 - -
Cca05g02041 768 Pfam GBF-interacting protein 1 N-terminal 14 74 IPR009719 -
Cca05g02041 768 MobiDBLite consensus disorder prediction 400 443 - -
Cca05g02041 768 MobiDBLite consensus disorder prediction 292 353 - -
Cca05g02041 768 MobiDBLite consensus disorder prediction 67 81 - -
Cca05g02041 768 MobiDBLite consensus disorder prediction 130 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02041 Cca-Chr5 40168259 40174990 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02041 - - gmx:100819602 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02041 05 40168259 40174990 Cca05g02041 05 40168259 40174990 ECH