Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02030 ATGGCGCAGGTGCTGTACATGGCTTTACCTTTTCCGGCAGAACCCCACAAAACTGCACcttcttcttcttcttcttcCAAGCCATTGAAGCTTCCCCATAGAACCCGCAGCACCGACATATCCATTCCCAAAGGTGGTGGCAATATTTCGGTGAAAACCCAGAAGCTGAATTTAGAGGTTTCTCCTCACAGAGCTGTGTCAGCGGTGAGATTGATGCGGATTGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAGAGAACGCTTGGCTTTCGCACTCGGGAATTGAATCATCTTGATCTCAGATTGGTCACAGATATTGTTGGGGGCACGATTCGCTGGAGAAGATATCTTGATCATCTTATCAGCTCACTGTGTCATGACAAAGATATATCTAGCATGGAACCACTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAACGTGAAGCTTGCTAAAGTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTTAAGGAGAATGAAACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCACAAGCACGTGCTTTGGCAACTCTGTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACCAAGAACCCAGTTTCAGCTTAAGAGCAAACCGTGCAAAAGGTTTTTCAAGAGATGACCTGGTGACACATCTTAATGCATTGAAGGTCCCACACAATCTTTCATTGCATTTGGATGAATTTGTTCGTGTCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTGCTCAAAAAGGGTTTTTGTTCAGTTCAGGATGAGAGTGCAGGTCTTGTAGTTTCTGTTGTGGATCCTCAACCTGGGGAAACTATCATTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTATATGGCCTCTCATTTAAGTGGCGAAGGGAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAGGTGGACAGTGTCATTACCGCTATCCATGCTGATCTTCGTACATTAACTGATAGTGGACAACTTAAGAGTAACAAAGTTTTGTTGGACGCTCCATGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTGGAGGATATGGAAGAACTGAAGAAATTACAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCCGGGGGAGTATTAGTTTACAGCACTTGCTCCATCGATCCAGAAGAGAATGACGACAGAGTAGCTGCATTTCTTGTAAGACATCCAGATTTTCACGTTGATCCTGTAGACAGATATGTTCCTCCTGACTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGATCCTTTGCAGCTCGCTGCTTACGAGTTGTGGCTGTTCTGATCTGTCTCTCTAATTCTTCATGCTTTGAAATCAAGCATAGAACTTTGGAGGGATGA 1650 0.4418 MAQVLYMALPFPAEPHKTAPSSSSSSKPLKLPHRTRSTDISIPKGGGNISVKTQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHLDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKVALRPGAGNMVNGILRKLVVLKENETLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNQEPSFSLRANRAKGFSRDDLVTHLNALKVPHNLSLHLDEFVRVKTGLQIVIHAGLLKKGFCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGEGKVFAVDVNSGRLRILKETAKLHQVDSVITAIHADLRTLTDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFHVDPVDRYVPPDFVTSSGFFFSNPVKHSLDGSFAARCLRVVAVLICLSNSSCFEIKHRTLEG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02030 549 Pfam NusB family 96 201 IPR006027 GO:0003723|GO:0006355
Cca05g02030 549 PRINTS RNA (C5-cytosine) methyltransferase signature 458 474 IPR023267 GO:0001510
Cca05g02030 549 PRINTS RNA (C5-cytosine) methyltransferase signature 408 420 IPR023267 GO:0001510
Cca05g02030 549 PRINTS RNA (C5-cytosine) methyltransferase signature 509 526 IPR023267 GO:0001510
Cca05g02030 549 PRINTS RNA (C5-cytosine) methyltransferase signature 311 325 IPR023267 GO:0001510
Cca05g02030 549 PRINTS RNA (C5-cytosine) methyltransferase signature 340 350 IPR023267 GO:0001510
Cca05g02030 549 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 251 527 IPR001678 GO:0008168
Cca05g02030 549 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 223 526 IPR029063 -
Cca05g02030 549 MobiDBLite consensus disorder prediction 17 31 - -
Cca05g02030 549 CDD AdoMet_MTases 338 464 - -
Cca05g02030 549 SUPERFAMILY NusB-like 100 235 IPR035926 -
Cca05g02030 549 Pfam 16S rRNA methyltransferase RsmB/F 330 523 IPR001678 GO:0008168
Cca05g02030 549 Gene3D - 79 221 IPR035926 -
Cca05g02030 549 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 37 527 IPR023267 GO:0001510
Cca05g02030 549 Gene3D Sun protein; domain 3 222 324 - -
Cca05g02030 549 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 106 523 IPR004573 GO:0006364|GO:0008649
Cca05g02030 549 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 37 527 - -
Cca05g02030 549 Gene3D Vaccinia Virus protein VP39 325 530 IPR029063 -
Cca05g02030 549 MobiDBLite consensus disorder prediction 13 46 - -
Cca05g02030 549 PRINTS Viridiplantae FMU-related RCMT signature 208 221 IPR023268 -
Cca05g02030 549 PRINTS Viridiplantae FMU-related RCMT signature 69 92 IPR023268 -
Cca05g02030 549 PRINTS Viridiplantae FMU-related RCMT signature 93 109 IPR023268 -
Cca05g02030 549 PRINTS Viridiplantae FMU-related RCMT signature 485 497 IPR023268 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02030 Cca-Chr5 40097678 40104562 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02030 K03500 - gmx:100779327 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02030 05 40097678 40104562 Cca05g02030 05 40097678 40104562 ECH