Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02021 ATGGCGCCTGTGGCGGTGGTAGCGAGAAGCACAGGCGCCGTTGCTGTTGGATTTACCATCTTCGTGTCGCTCGCGCTCACTTATTTCATCTGTGATCGCCACACgaagaagaataagaagaagaagaagaagaagaaATCTAAGAAGGGACTCGTCGACGCCATCGGTAACACTCCCCTCATTCGGATCAATAGCCTCTCCGACGCCACCGGTTGCCAAATTCTGGGCAAGTGCGAGTTCTTGAACCCCGGAGGCAGCGTCAAAGACCGCGTTGCTCTTCAAATCATTCAAGAGGCTCTGGAATCTGGGCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACCGCCATTAGCATTGCCACTGTTGCTCCTGCATTTGGATGCAAAGCACACGTCGTTATTCCAGATGATGCTGCCATCGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGACCAGTATCCATTACCCACAAGGACCATTTTGTCAATATTGCTAGAAGAAGGGCCTCTCAAGCAAATGAGTTTGCGTTGAAGAATAGAAATTCACAATCGAATGGCAAGGAGGACACTGAGAAAATAAATGGTTATGAATCTGATGGATACAATCACAGTTCGGTTTTTCCTCTCGATTGTCAAGGTGGGTTTTTTGCTGATCAGTTTGAGAACTTAGCGAACTTCAGGGCACATTATGAGGGTACAGGGCCTGAGATTTGGGACCAGACCAATGGAAAGTTAGATGCGTTTGTTGCAGCAGCTGGCACCGGTGGTACTGTGGCTGGTGTTTCTAGGTTTCTTCAGGAAAAGAATCCAAACGTCAAGTGCTTCCTAGTAGATCCTCCTGGCTCTGGTTTGTTTAACAAGGTAACTAGGGGGGTGATGTACACCAAAGAGGAAGCAGAAGGACGAAGACTTAAGAATCCATTTGACACCATAACAGAAGGAATTGGAATTAACAGGATAACAAGGAATTTTGGAATGGCAGAACTTGATGGGGCCTTTAGAGGCACCGATAGGGATGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAACGATGGGCTGTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTTGGAGCAGTTAGAGTAGCGCAGGCAATTGGACCTGGTCACACAATTGTAACCATACTCTGCGACAGTGGAATGAGGCATTTGAGCAAGTTCTATAATGCTGAATACTTGTCTAAGCTTGGTTTGACACCGAAAGCAACTGGATTGGAATTCTTAGGTATCAAATGA 1287 0.46 MAPVAVVARSTGAVAVGFTIFVSLALTYFICDRHTKKNKKKKKKKKSKKGLVDAIGNTPLIRINSLSDATGCQILGKCEFLNPGGSVKDRVALQIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAFGCKAHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASQANEFALKNRNSQSNGKEDTEKINGYESDGYNHSSVFPLDCQGGFFADQFENLANFRAHYEGTGPEIWDQTNGKLDAFVAAAGTGGTVAGVSRFLQEKNPNVKCFLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFGMAELDGAFRGTDRDAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYNAEYLSKLGLTPKATGLEFLGIK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02021 428 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 42 409 IPR036052 -
Cca05g02021 428 Pfam Pyridoxal-phosphate dependent enzyme 53 395 IPR001926 -
Cca05g02021 428 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 77 95 IPR001216 GO:0006535
Cca05g02021 428 Gene3D - 222 236 IPR036052 -
Cca05g02021 428 Gene3D - 85 195 IPR036052 -
Cca05g02021 428 CDD CBS_like 56 402 - -
Cca05g02021 428 Gene3D - 237 401 IPR036052 -
Cca05g02021 428 Gene3D - 55 84 IPR036052 -
Cca05g02021 428 PANTHER CYSTATHIONINE BETA-SYNTHASE 29 427 - -
Cca05g02021 428 PANTHER CYSTEINE SYNTHASE-RELATED 29 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02021 Cca-Chr5 40048457 40050883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02021 55 402 Miscellaneous Gene Families AT3G04940 30.000 3.55e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02021 K01738 - gmx:100799081 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02021 05 40048457 40050883 Cca05g02021 05 40048457 40050883 ECH