Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02018 ATGGAGGGAAAGAGGATGAGGATCCAATCGGAGTCACAACCACAGAGCGTGATTCTACTCACCAAAATCAAAGATTTCACTCGAGCTTTGCTTTCAGACCTAACCAACCGACGCTCACCGCTCATTCTCATCGATCGCTTCAGAAGTTACTGCACCCTTCCCAACTCCAACTGCTTTTGTGCTTCCGATTGTCCGTGCGGAAAGGAAATTCTCACACTCAGCAGAAAAACTCACGCGCACAGACTAGtCGTCATGTTGAGAGTGCTGCTGATAGTTCAGAAACTTCTGCAAGAGAACAAGCATAGTTCCAAGAGAGACATTTATTACACGTATCCTTCTGTATTTTTAGGCGAGTCTTTCAATTTGCTCAATCAGTCAATGGTAGACCAAGCAATTAATGATATATGTATTCTGATGCAATGCAGCCGCCATAACCTTAATGTGGTAGTTTCCGCAGGGAATGGGTTAATTATGGGCTGGATAAGATTCTCTGAAGGAGAAAGGATATATGACTGCATCAGTTCTCCTAACACTGCCCACCCTGTTCCTGTTTATGTTGAAGAAGTTCAAGATATTATTAGTGTTGCTCATTACATTTTAGTTGTCGAGAAAGAATCAGTTTTCCAAAGACTAGCAAATGACCAATTCTGCAATTCAAATCACTGTATTGTCATCACCGGAAGAGGCTACCCAGATATTCCTACAAGAAGGTTTTTGCGGCTTCTAGTTGACAATTTGCGCCTGCCTGTTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACTTACAGATTTGGTTCAATGCAAATGGCTTATGACACGAAACATCTTCGTGTCCCAGAGATACACTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATATTCTGTTCCAAAGCAGTGTCTCCTTCCTTTGACTGCTGAAGACAAAAGAAAAGTTGAAGCCATGTTACTTAGATGCTACCTTCAAAGGGAGGTGCCACAATGGAGGTTGCAGCTAACGTTGATACTGCAAAGAGGAATAAAGTTTGAGATTGAAGCCTTATCTGTGTACGCACTTTCATTCTTGTCAGAGTCTTACATACCATCTAAAATTGAAGGTAAATTGATGATGTAG 1128 0.4184 MEGKRMRIQSESQPQSVILLTKIKDFTRALLSDLTNRRSPLILIDRFRSYCTLPNSNCFCASDCPCGKEILTLSRKTHAHRLVVMLRVLLIVQKLLQENKHSSKRDIYYTYPSVFLGESFNLLNQSMVDQAINDICILMQCSRHNLNVVVSAGNGLIMGWIRFSEGERIYDCISSPNTAHPVPVYVEEVQDIISVAHYILVVEKESVFQRLANDQFCNSNHCIVITGRGYPDIPTRRFLRLLVDNLRLPVYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIHWLGAFPSDSERYSVPKQCLLPLTAEDKRKVEAMLLRCYLQREVPQWRLQLTLILQRGIKFEIEALSVYALSFLSESYIPSKIEGKLMM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02018 375 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 12 371 - -
Cca05g02018 375 SUPERFAMILY DNA topoisomerase IV, alpha subunit 79 370 IPR036078 GO:0003677|GO:0005694
Cca05g02018 375 Pfam Type IIB DNA topoisomerase 81 148 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cca05g02018 375 Gene3D - 6 150 IPR036388 -
Cca05g02018 375 PRINTS DNA topoisomerase VI subunit A family signature 125 142 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 PRINTS DNA topoisomerase VI subunit A family signature 199 216 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 PRINTS DNA topoisomerase VI subunit A family signature 144 159 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 PRINTS DNA topoisomerase VI subunit A family signature 223 244 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 PRINTS DNA topoisomerase VI subunit A family signature 255 271 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 PRINTS DNA topoisomerase VI subunit A family signature 104 115 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 CDD TOPRIM_TopoIIB_SPO 197 359 IPR034136 -
Cca05g02018 375 PRINTS SPO11 homologue signature 213 228 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cca05g02018 375 PRINTS SPO11 homologue signature 117 137 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cca05g02018 375 PRINTS SPO11 homologue signature 260 279 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cca05g02018 375 PRINTS SPO11 homologue signature 295 319 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cca05g02018 375 PRINTS SPO11 homologue signature 356 375 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cca05g02018 375 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 12 371 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca05g02018 375 Gene3D - 154 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02018 Cca-Chr5 40026130 40029931 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02018 K10878 - gmx:100813920 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02018 05 40026130 40029931 Cca05g02018 05 40026130 40029931 ECH