Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02005 ATGATTGAAAATGTGTTAGAGATTAAAGACACACATGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCGAGTTTAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGGGTGATTTGCTAGAAAGTACTACGGTTGGAGATATGGCTCACAAGCCTGCATATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTCAGAGAGTTCAGAATCAGGAAGGTTCACATGGCAGTTGTTCTTAATGAGTATGGTGGAACTGTGGGGATTGTAACTCTCGAGGATGTTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGAGGAGATACAAAAAAAAACTGGCTACATAGTAATGCGAGCTGAGGGTGTTTTTGATGTTGATGCAAATACATCCATTGATCAGCTCTCTGAAGATTTGAATATCAAGATGCCAGAGGGTCACCAATATGAGACAGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATGAAGATGATAGCAATGAGTCCAATACTGACCAGCAGGATCAGAAGGAGAAGAACCAGATTTTCAAACTTGAGATACTAGCTGGAAATGCCAGAAAGGTGAGTGCTGTTCGGTTTGAACGGATAAATAATAATGATGAAATGTTGGAGACTAAAGTAGCTCGCATAGTCCCAAAAATCATGAAAAGAAAATGGAGCAGCGATGAAAACTCAGAGGACGATGCAGAATATGATGGAGACACATTTGCAAAGAGACCACAGGATGAAATTCCTAGTGAATATTTAGTTGATCAGGAAATTTCTAACAGAGAATAA 966 0.3934 MIENVLEIKDTHVREVMTPLVDVVAIDASLSLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGDLLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDSNESNTDQQDQKEKNQIFKLEILAGNARKVSAVRFERINNNDEMLETKVARIVPKIMKRKWSSDENSEDDAEYDGDTFAKRPQDEIPSEYLVDQEISNRE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02005 321 Gene3D - 1 153 IPR046342 -
Cca05g02005 321 PANTHER BNAC03G73630D PROTEIN 1 309 - -
Cca05g02005 321 SMART CorC_HlyC_2 157 260 IPR005170 -
Cca05g02005 321 MobiDBLite consensus disorder prediction 281 321 - -
Cca05g02005 321 Pfam CBS domain 13 71 IPR000644 -
Cca05g02005 321 Pfam CBS domain 81 136 IPR000644 -
Cca05g02005 321 Gene3D - 154 259 IPR016169 -
Cca05g02005 321 CDD CBS_pair_CorC_HlyC_assoc 12 133 IPR044751 -
Cca05g02005 321 ProSiteProfiles CBS domain profile. 84 142 IPR000644 -
Cca05g02005 321 MobiDBLite consensus disorder prediction 294 321 - -
Cca05g02005 321 SUPERFAMILY FAD-binding/transporter-associated domain-like 155 263 IPR036318 GO:0050660
Cca05g02005 321 Pfam Transporter associated domain 158 259 IPR005170 -
Cca05g02005 321 ProSiteProfiles CBS domain profile. 17 78 IPR000644 -
Cca05g02005 321 PANTHER HEMOLYSIN-RELATED 1 309 - -
Cca05g02005 321 SUPERFAMILY CBS-domain pair 1 139 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02005 Cca-Chr5 39921694 39926949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02005 - - gmx:100778907 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02005 05 39921694 39926949 Cca05g02005 05 39921694 39926949 ECH