Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01977 ATGGCGAGCGAGAACGAACCCGCGAAGCTGCTGCTACCATACCTTCAACGTGCCGATGAATTGCAAAAACACGAACCACTCGTCGCTTATTACTGTCGGTTATATGCGATGGAACGGGGGTTGAAGATTCCGCAAAATGAGCGCACAAAGACCACTAATGCTCTTCTTATTTCGCTCATGAAGCAGCTTGAGAAGGATAAAAAGTCAATCCAGTTGGGGCCTGAAGACAATTTGTATCTCGAGGGATTTGCTTTGAATGTGTTTGCAAAGGCAGACAAGCAAGATCGTGCTGGAAGAGCAGATTTGAATACGGCAAAAACATTTTATGCTGCCAGCATCTTTTTTGAGATTCTTAATCAATTTGGACCTGTTGCGCCTGATCTGGAGCAGAAACAAAAATATGCAGCATGGAAAGCAGCTGATATAAGAAAAGCCTTGAAAGAAGGAAGGAAGCCCATAGCTGGCCCCCCTGATGGCGATGAGGACCTGTCAGATTCAAAACTTAACCTGGACTCGGGCAATATTGAAACTAATGTTTCCAGTCCTAGACCAGAATCTGATCCATCACTTAGTCATCATGACCGTGTCAATTACCAGAATCGCCCTGCGTCTGATTTTCATGATACTGTTATCGACCAACATTCCGGAAACATTTCACCATCTACGCAATTTCATGATAATAACATGCATCCTCCTCCACCTCCCCAAGACTATCATCCTCCCCCACCTTCCCAAGATTATCATACTCCCCCATCTTCCCAAGATTACTATCCTCCTCCACCTGCCACCAGATCAGAAAGTCCTTATTCTCAACCCTACAACCATCAACAATACTCAGAAGAGCCCCCACAGCATTTAAGTCATAACTACCCTTCTCATGAAACTTCCTCGTTTTCCTATCCCCATTTTCAGTCTTATCCAAGTTTTACAGAAACCAGCCTTCCATCAGTCCCATCAAACTATACCTATTATCAAGGATCTGATACTTCATTTTCTTCTCAATCGGCTCCGCCAACTACAAGCTATTCATCAAGTGCTCAACACAGTTACAGCAGCGGAAATGTAAATGGAACTGTCGTGGAACCTAAGGCAACTACTCAGACATACCAGTACGACAGTAACTACCAGCCAGCACCTGAAAAAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCTCTGGCATTTGATGATGTCTCTGTTGCAGTAGACTTCTTGAAGAAATCACTTGAGTTGCTGACAATTCCTTCAGCTGGGCAGTAA 1269 0.4452 MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQNERTKTTNALLISLMKQLEKDKKSIQLGPEDNLYLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGPVAPDLEQKQKYAAWKAADIRKALKEGRKPIAGPPDGDEDLSDSKLNLDSGNIETNVSSPRPESDPSLSHHDRVNYQNRPASDFHDTVIDQHSGNISPSTQFHDNNMHPPPPPQDYHPPPPSQDYHTPPSSQDYYPPPPATRSESPYSQPYNHQQYSEEPPQHLSHNYPSHETSSFSYPHFQSYPSFTETSLPSVPSNYTYYQGSDTSFSSQSAPPTTSYSSSAQHSYSSGNVNGTVVEPKATTQTYQYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSVAVDFLKKSLELLTIPSAGQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01977 422 MobiDBLite consensus disorder prediction 328 358 - -
Cca05g01977 422 MobiDBLite consensus disorder prediction 202 226 - -
Cca05g01977 422 Gene3D - 3 152 IPR023175 -
Cca05g01977 422 Pfam Vta1 like 13 148 IPR039431 -
Cca05g01977 422 MobiDBLite consensus disorder prediction 267 296 - -
Cca05g01977 422 MobiDBLite consensus disorder prediction 227 266 - -
Cca05g01977 422 MobiDBLite consensus disorder prediction 148 167 - -
Cca05g01977 422 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 419 IPR044538 GO:0032511
Cca05g01977 422 MobiDBLite consensus disorder prediction 187 201 - -
Cca05g01977 422 Gene3D Immunoglobulin FC, subunit C 378 417 - -
Cca05g01977 422 Pfam Vta1 C-terminal domain 379 416 IPR041212 -
Cca05g01977 422 MobiDBLite consensus disorder prediction 148 296 - -
Cca05g01977 422 MobiDBLite consensus disorder prediction 168 186 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01977 1 118 Glycosyltransferase AT2G31960 26.772 6.20e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01977 K12199 - gmx:100783739 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01977 05 39660279 39663039 Cca05g01977 05 39660279 39663039 ECH