Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01973 ATGGAACTGTGCACACTAACCATCACAAGTTCTCTTCTTTTCAACCCTTCATTTTCTTCAAACTCTTTTCTTCCTCTTCGTGCCAATGCCAACGCTACAATACCCTTCAAATTCAATTCCCTTAAACTCTCATCCTTTTCGCCTCATGTTCACCTCTTTCAACCCGTTCGCTCTCGCCACActtcttctccctttacactctcagcttcttcttcttcttcttcAGTTGCAGTTGGCACAGAAAAAGACCATCTTCCAGCAGAATTGAAGGTTACTGAAACAGAGGAACCCAATTCCAGAGTTAGATTGCAAGTGGAGGTGCCACCGTTGGTATGTGAGGATTGTTACAAAAGGGTCATAGCAGAGTTTATGAAGCAAGCAAAGATCCCTGGATTTCGTCCTGGAAAGAAAGTTCCGGAAAGCATTCTTATTAGTTACGTTGGGAGTAAAAATGTTCAGAAGGCTACTATTGAATCTATATTGAGGAGAACACTTTCACATGCTATGACATCGGTTACTGGAAGGGCTTTGCAGGACTCAGTACGAATAATGACCAAGTTTTCTGAGATGGAAGAGACATATTCTTCTCTTGGGTCCCTTAGATATGATGTCATTGTTGATATTGCACCAGAAATCAAATGGATTCCCGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATAGATGCTCACAGAACAGCTGAACAAGAATTTAAAAGGCGTTACAAATCTATTGGCTCACTGAGAGTGGTTACTGACAGAGGGCTACAGGTTGGTGATGTTGCTGTCCTTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATGTTAAAAATATTCCTTCTGCTGAAAGTAAAGGCTTTAATTTTGATACAGAAGATGGTGACAAAGTCTTACCGGGTTTCCTTGATTCTATAATTGGAATTCTTCGAGGTGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAACATGGAATCAAGAGAATCTTCGGGGTGTTCATGCTCAGTTTACTGTTGAATGCAAAGAACTCTTTTACAGAGATTTACCAGAGCTGGATGATTCTGTTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAACAGGTCAAGGACTTGTTGTTACAAAGATGCTTAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTGCATCAGATTTCTAAGATGGTAGAGGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGACAAAAATGAAGCTAAATGAGCAGCAGCTGGCAACTTTGTCAAGTCCGAAGGCTGTGAACGAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAATTTGGCTGTTGGTGATATATATAAACGTGAAAATCTGCAGTTTGCTACTGATGACCTTGTGAAGGAGGTTGAGAATTCCATTGCCGAATTCAAACGTCAAAAACAAGAATATGATGAGGAACGGGTGAAGGATCAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAAGCAGAGATTCAGTATATAACTAGATGA 1626 0.3856 MELCTLTITSSLLFNPSFSSNSFLPLRANANATIPFKFNSLKLSSFSPHVHLFQPVRSRHTSSPFTLSASSSSSSVAVGTEKDHLPAELKVTETEEPNSRVRLQVEVPPLVCEDCYKRVIAEFMKQAKIPGFRPGKKVPESILISYVGSKNVQKATIESILRRTLSHAMTSVTGRALQDSVRIMTKFSEMEETYSSLGSLRYDVIVDIAPEIKWIPDNNAYKNLKIVVEIDSDIDAHRTAEQEFKRRYKSIGSLRVVTDRGLQVGDVAVLDISATTIDQDESNVKNIPSAESKGFNFDTEDGDKVLPGFLDSIIGILRGESKSFPLVFPETWNQENLRGVHAQFTVECKELFYRDLPELDDSVADKLLPGCTTVEQVKDLLLQRCLEVEQTAREQATDNAILHQISKMVEVDIPQSLFEEQGRQLYGANLLEIQTKMKLNEQQLATLSSPKAVNEYLEHQKENITNLIKQNLAVGDIYKRENLQFATDDLVKEVENSIAEFKRQKQEYDEERVKDQVQEILEGAKVLEWLREQAEIQYITR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01973 541 Gene3D - 250 357 IPR046357 GO:0003755
Cca05g01973 541 Pfam Bacterial trigger factor protein (TF) C-terminus 373 530 IPR008880 GO:0006457|GO:0015031
Cca05g01973 541 Gene3D - 87 212 IPR036611 GO:0006457|GO:0015031
Cca05g01973 541 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 73 540 IPR005215 GO:0015031
Cca05g01973 541 SUPERFAMILY FKBP-like 257 360 - -
Cca05g01973 541 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 73 540 - -
Cca05g01973 541 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 359 537 IPR027304 -
Cca05g01973 541 Hamap Trigger factor [tig]. 89 537 IPR005215 GO:0015031
Cca05g01973 541 SUPERFAMILY Trigger factor ribosome-binding domain 89 217 IPR036611 GO:0006457|GO:0015031
Cca05g01973 541 Pfam Bacterial trigger factor protein (TF) 90 229 IPR008881 GO:0006457|GO:0015031
Cca05g01973 541 Coils Coil 491 511 - -
Cca05g01973 541 Gene3D - 221 536 IPR037041 GO:0006457|GO:0015031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01973 K03545 - gmx:100805543 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01973 05 39602049 39607379 Cca05g01973 05 39602049 39607379 ECH