Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01969 ATGTTCGTCCACAAGGTTTTGTCCCGTGTCTCCAAAACCATTGTCGGAACCTCGCTCCTCTCTGCTTCGCAAAGACCCCAACACTTGTTCACCCGCTCCAATCACTTACATTCCCTCCTTCCTCAATCACCCAACAAGCTGATTCCTGTTCAAGTCAATGTGTTGCTGCCACCAATAAATTCATTATCAACTCCAAGATTTGGGTTTTGTTCATCAGCTTCAACTGAAACTAATGACAAGGAAAAAGGGAATAATGTGCGTAATGGAGATTCTACAAATGATGACCCTGCAAGAGCAAATGAGGAGGCAAAGAATATTGATCAGGCTAAACAAactaaacctgcagataaaactgaggaatcaggttctattccggattctcaatctcaaactggcAAAAGGAAGAGAGGTTTTAAACGAACAGCATTTTCTgattcagattcagattcagattcagaGAGTGAGTGCGACCTATCCAGGGATGATTTAATTAAACTTCTGGCTGAGAAGGAAGAACTTGTAAAATCAAAGCACAAGGAGATTGAGAAAATGCAGGATAAAGTTCTACGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCTAAAAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCGTCCTCAGTTGTAAAGGAAAGTTTTTCAAAAATTGATACGGCTAATGACTCTGCTGAAGCCGTAAAACTCCTGCAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTGTCAGAGGTACTTAAAAAGTATGGTGTAGAAAAATTTGATCCTACAAACGAGCCCTTTGATCCACACAGGCATAATGCTGTTTTCCAAATCCCTGATGGTTCTAAGCCTCCAGGAACCATTGCAGCTGTTTTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGCCCAGCGGAAGTTGGTGTAACCCAAGCAGTCGAGGATGATGAGAATAATGGAAAAGATAACATAGCTGATAAGGGCTCACAGGATTAG 1062 0.3757 MFVHKVLSRVSKTIVGTSLLSASQRPQHLFTRSNHLHSLLPQSPNKLIPVQVNVLLPPINSLSTPRFGFCSSASTETNDKEKGNNVRNGDSTNDDPARANEEAKNIDQAKQTKPADKTEESGSIPDSQSQTGKRKRGFKRTAFSDSDSDSDSESECDLSRDDLIKLLAEKEELVKSKHKEIEKMQDKVLRTYAEMENVMERTRREADNSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDTANDSAEAVKLLQTLLQGVEMTEKQLSEVLKKYGVEKFDPTNEPFDPHRHNAVFQIPDGSKPPGTIAAVLKAGYMLYDRVIRPAEVGVTQAVEDDENNGKDNIADKGSQD 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01969 353 ProSitePatterns grpE protein signature. 288 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 MobiDBLite consensus disorder prediction 337 353 - -
Cca05g01969 353 Gene3D Head domain of nucleotide exchange factor GrpE 277 333 IPR009012 GO:0006457
Cca05g01969 353 Coils Coil 167 205 - -
Cca05g01969 353 MobiDBLite consensus disorder prediction 73 156 - -
Cca05g01969 353 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 168 277 IPR013805 -
Cca05g01969 353 Gene3D - 159 276 IPR013805 -
Cca05g01969 353 CDD GrpE 182 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 Pfam GrpE 168 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 PRINTS GrpE protein signature 189 205 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 PRINTS GrpE protein signature 285 300 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 PRINTS GrpE protein signature 312 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 278 333 IPR009012 GO:0006457
Cca05g01969 353 PANTHER GRPE PROTEIN 1 107 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 PANTHER GRPE PROTEIN 137 335 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 Hamap Protein GrpE [grpE]. 116 333 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca05g01969 353 MobiDBLite consensus disorder prediction 80 120 - -
Cca05g01969 353 MobiDBLite consensus disorder prediction 332 353 - -
Cca05g01969 353 PANTHER GRPE PROTEIN HOMOLOG 1 107 - -
Cca05g01969 353 PANTHER GRPE PROTEIN HOMOLOG 137 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01969 Cca-Chr5 39507661 39512201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01969 K03687 - gmx:100803396 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01969 05 39507661 39512201 Cca05g01969 05 39507661 39512201 ECH