Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01968 ATGGAGTTCGACCCGATCCCAGTCGGTTCGTGCTCCAAAGAACACCAGACGATCTATAAGGACTGGTTCAATATCGCTGATTCAGATAACGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGTCTCGCCAAGATCTTAAGCAGGTGTGGTCTATTGCTGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCACAATCTGGGCACTCAATAACACAAGATCTGCTGACTAGTGATGTTGATTTTAGAAATTTGAAACCTCCCACAATGGACGGTTTGGACATATTACTTAAGAAAAAGCATAAACAAAAAGATGTTGATGCAAATGGTAGTCCTCAATTGCACCAACCACTATCAAGTAATTGGTTTTCTTCAAAGTCAACCAAAAAGGTGTCGCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGGGGCTTTATATTCAGAAGTTGAAGCCTTTAGAAGTTACTTACCGCTTTAATGATTTTGTATCCCCATTACTGACAGAGAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTACTTAAAAGTAGCTATCCAGGAGCACATATTGGACCTGAGCCTACAACTGATAGGTTTGTTGTTGTCATGTCTGGAACTGATGAAAGAACCGTTCCTGGAAATACAGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGCATGTTCACAAATGCCTCATCCACTATTGGAACACATCACATTTGTCGACACTCCTGGAGTTCTATCTGGAGAAAAGCAACGGACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTAATACTCTTGCTGTTTGATCCTCACAAACTTGATATTAGTGATGAGTTCAATCGTGTGATATCATCTTTACGGGGACATGATGACAAAATTCGAGTGGTTTTGAATAAGGCAGATCAAGTTGACACCCAACAACTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGAAAGGTGCTGAAGACACCTGAAGTGATGCGCGTGTATATTGGGTCCTTCAATGACAAGCCTGTGAATGATGCTGTCACTGGTCCAATTGGTAAAGAACTCTTTGAAAAGGAACAGGATGATCTTCTTTCGGATCTGAAAGATGTACCAAAAGCGGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTATATTATCAGTCATCTTAAAAAGGAAATGCCTGCAATGATAGGTAAAGCTAAAGCTCAACAAAAGCTCGTTGATAATTTGGCAGGGGAATTTGGAAAGGTGCAGAGGGAGTTCCATTTACCTCCTGGTGATTTCCCAAATGTAGAGCATTTTAGAGAGACCTTGAGTGGTTACAATATTGATAAGTTTGAAAAACTGAAACCGAAAATGATACAAGCAGTTGATGACATGCTAGCTTATGACATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTATGATTAA 1629 0.4045 MEFDPIPVGSCSKEHQTIYKDWFNIADSDNDGRITGSDATKFFAMSNLSRQDLKQVWSIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITQDLLTSDVDFRNLKPPTMDGLDILLKKKHKQKDVDANGSPQLHQPLSSNWFSSKSTKKVSLSSVTSIIDGLKGLYIQKLKPLEVTYRFNDFVSPLLTESDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGTDERTVPGNTVAVQADMPFSGLTTFGTAFLSKFACSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAVTGPIGKELFEKEQDDLLSDLKDVPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLVDNLAGEFGKVQREFHLPPGDFPNVEHFRETLSGYNIDKFEKLKPKMIQAVDDMLAYDIPNLLKNFRNPYD 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01968 542 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Cca05g01968 542 SUPERFAMILY EF-hand 12 86 IPR011992 -
Cca05g01968 542 Gene3D - 161 533 - -
Cca05g01968 542 SMART eh_3 12 103 IPR000261 GO:0005515
Cca05g01968 542 PANTHER CALCIUM-BINDING EF HAND PROTEIN 20 540 - -
Cca05g01968 542 Pfam Cytoskeletal-regulatory complex EF hand 20 80 IPR000261 GO:0005515
Cca05g01968 542 Pfam Dynamin family 197 356 IPR045063 -
Cca05g01968 542 ProSiteProfiles EH domain profile. 15 93 IPR000261 GO:0005515
Cca05g01968 542 Pfam N-terminal EH-domain containing protein 160 192 IPR031692 -
Cca05g01968 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 464 IPR027417 -
Cca05g01968 542 CDD EH 19 85 IPR000261 GO:0005515
Cca05g01968 542 Pfam Domain of unknown function (DUF5600) 432 533 IPR040990 -
Cca05g01968 542 Gene3D - 197 425 IPR027417 -
Cca05g01968 542 CDD EHD 196 440 - -
Cca05g01968 542 PANTHER EH DOMAIN 20 540 - -
Cca05g01968 542 Gene3D - 10 109 - -
Cca05g01968 542 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 191 429 IPR030381 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01968 Cca-Chr5 39496859 39505057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01968 1 542 EF-hand Containing Proteins AT3G20290 82.569 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01968 K12483 - gmx:100804468 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01968 05 39496859 39505057 Cca05g01968 05 39496859 39505057 ECH