Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01965 ATGCCTCCTCTCGCATTCCCCTTCTTCCTCCTTCTTATCTCACTCTCTGCTTCATCATCAGAAGCGGGATCGATCGGAATTAACTATGGGAGAGTGGCGAACGACCTACCTACACCGGCGAAGGTGGTGGAGCTTCTGAAGACCCAAGGTCTGAACCGCGTGAAGCTCTACGACACGGAGGCCACCGTCTTAAGCGCGTTTGCGAACTCAGGAATAAAGGTGGTGGTAGCGATGCCAAACGAGCTTCTCTCAAACGCAGCCGCGGACAAATCATTCACGGACGCGTGGGTCCAAGCGAACATCTCCAAGTACTACCCCGCCACGCAAATCGAGGCCATCGCCGTGGGCAACGAAGTGTTCGTGGACCCCAACAACACCACCAAGTTCCTCGTCCCAGCCATGAAGAACAACGTCCACGCCTCTCTCGCAAAGCAAAACCTCCACACCGCCATTAAAGTCTCCTCACCGCTCGCACTCTCGGCGCTTCAAAGCTCCTTCCCCGCCTCCTCCGGTTCCTTCAAAGCCGAACTCGTCGAACCGGTTATCAAGCCGTTGCTGGAGTTCCTCCGCCAAACCGGTTCCTACCTCATGCTCAACGCCTATCCCTTTTTCGCATACGCCGCCAACGCTGATAAGATCTCCCTCGACTACGCGCTCTTCAAGGAAAACGCTGGTGTTGTTGATTCTGGTAACGGTTTGAAGTATAGTAACCTCCTCGACGCACAAATCGACGCCGTTTTCGCTGCCATGTCAGCGCTCCAATACGACGACGTTGGGGTCGCGGTTTCCGAGACGGGTTGGCCCTCCGTGGGGGACTCTAACGAGGTTGGAGCCAGCCCTGAGAATGCGGCGTCGTATAACGGAAACTTGGTTAAGCGCGTTTTAAGTGGGAGTGGGACCCCCTTGAAGCCCAATGCCTCACTCGATGTTTTTCTCTTCGCGCTTTTCAACGAGAATCAGAAAACGGGGCCCACATCGGAGAGAAACTACGGGCTGTTTTACCCCAGCGAGAAAAAGGTCTACGACATTCCGCTGACGGCGGAGGAGGTTAACGCCTCCTCGTCCACGCCGTCCGCCGTCCAGAAGAGTCAGGTTCCGGTGAGTGGAGGCGAGGCCTCGACGACGTCGTCTAGCGGGCAGACGTGGTGCGTGGCGAGTGGCGGTTATTCCGAGGAGAAGCTGAAGGACGCTCTTGACTACGCTTGCGGAGAGGGTGGCGCCGATTGCACTCCCATTCAACCCGGTGCCACGTGTTACAATCCCAACACGCTGGAGGCGCATGCTTCCTACGCTTTCAACAGTTACTATCAGAAGAAGGCACGTGCATCCGGCACGTGCAACTTCGGTGGTGCTGCTTATGTCGTCACTCAGCCTCCCAAGTATGGGAATTGTGAATTCCCCACAGGATACTGA 1413 0.5619 MPPLAFPFFLLLISLSASSSEAGSIGINYGRVANDLPTPAKVVELLKTQGLNRVKLYDTEATVLSAFANSGIKVVVAMPNELLSNAAADKSFTDAWVQANISKYYPATQIEAIAVGNEVFVDPNNTTKFLVPAMKNNVHASLAKQNLHTAIKVSSPLALSALQSSFPASSGSFKAELVEPVIKPLLEFLRQTGSYLMLNAYPFFAYAANADKISLDYALFKENAGVVDSGNGLKYSNLLDAQIDAVFAAMSALQYDDVGVAVSETGWPSVGDSNEVGASPENAASYNGNLVKRVLSGSGTPLKPNASLDVFLFALFNENQKTGPTSERNYGLFYPSEKKVYDIPLTAEEVNASSSTPSAVQKSQVPVSGGEASTTSSSGQTWCVASGGYSEEKLKDALDYACGEGGADCTPIQPGATCYNPNTLEAHASYAFNSYYQKKARASGTCNFGGAAYVVTQPPKYGNCEFPTGY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01965 470 Pfam Glycosyl hydrolases family 17 25 343 IPR000490 GO:0004553|GO:0005975
Cca05g01965 470 SMART X8_cls 381 466 IPR012946 -
Cca05g01965 470 Gene3D Glycosidases 23 353 - -
Cca05g01965 470 MobiDBLite consensus disorder prediction 351 378 - -
Cca05g01965 470 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 11 463 - -
Cca05g01965 470 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 463 IPR044965 GO:0004553|GO:0005975
Cca05g01965 470 Pfam X8 domain 381 452 IPR012946 -
Cca05g01965 470 SUPERFAMILY (Trans)glycosidases 25 343 IPR017853 -
Cca05g01965 470 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Cca05g01965 470 Gene3D - 375 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01965 Cca-Chr5 39462502 39464707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01965 20 459 Glycoside Hydrolase AT5G55180 71.882 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01965 - - gmx:100803406 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01965 05 39462502 39464707 Cca05g01965 05 39462502 39464707 ECH