Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01964 ATGATGGATGATAGGGTGGGAGAAATGAAGAAAGGCAAAGTTGAAAAGAACACACTATCCCTATGCCTTGCTTTACTCTCTCTCATTCCCTTTTGTCACTCCTTCAACTATGGCCAAGCCCTCTCCCAGAGCCTCCTCTACTTTGAGTCACAGCGTTCAGGTCGCTTACCCTACAACCAAAGGCTCACTTGGCGTCACCATTCTGCCCTCACCGATGGCCTAGAACAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCTGGGGACAATGTGAAATTTGGGCTACCCATGGCATTCACCATAACGCTTCTCTCGTGGGCTACCATACAATACGGCCAACAAATCGCCGCTGCCGGCGAGTATGCTCACGCTCTGGAGGCTATCAAGTGGGGAACCGATTATTTCATCAAGGCCCACACACAACCAAATGTTCTTTGGGTCCAGGTGGGTGACGGAGACACTGATCACTACTGTTGGCAGCGGCCGGAAGACATGACGACGTCGCGGCGAGCTTACAAGGTTGACGCAAACAACCCCGGCTCGGATGTGGCcggcgagacggcggcggcgttggcggcggcgTCCATTGTGTTTAGGAGAACAAACCCACATTACTCTCAACTACTTTTGCATCATGCACAACAGTTGTTTGAGTTTGGTGACAAGTACAAAGGGAAGTATGATGAGAGTGTTGGAGTGGCTAAAGGGTATTATGGTTCGGTTAGTGGGTACATGGATGAGTTGCTTTGGGCTGCCATTTGGCTCTATAGGGCCACCCAAAAGGATGAATATTTCAATTATCTTTTGGAGAATGCTAATGACTTTGGTGGGACCACTTGGGCCATCACTGAATTCAGCTGGGACGTTAAGTACGTTGGTGTTCAAACCATTGCTTCCATGTTCCTTGTGGAAGATAATAAGCACAAGAAACACCAAGTCATACTAGAACAGTACCGTTCAAAAGCCCAGCACTACCTTTGCGCGTGCCTCAACCTCAACAACGCCACTAACGTGGATCGCACCCCAGGGGGGTTACTGTACATCCGCCAATGGAACAACATGCAGTACGTAGCAACGGCGTCGTTTCTTCTCACACTCTACTCTGATCATCTTCTAGCCACAAATCAGAAGCTGAATTGCCCAAAGGCCGAGGTGGGCCCCCATGAGATGTTCGCCTTTGCAAAATCACAGGTTGATTACATCTTGGGCTCTAATCCAATGGGTATGAGCTACTTGGTGGGCTATGGTCCCAATTTCCCAAAGAAGGTGCACCATAGGGGTTCATCCATTGAATCATTTGGGGAAAACAAGGGTTTTATTGGGTGCACTCAGGGTTATGACAATTGGTATGGACGCGCTGAGCCCAACCCTAACGTACTCGTTGGGGCCCTCGTGGGTGGGCCTGATATTAAGGACCAATTTAAAGATGAGAGAAGAAATTTCATTCAAACAGAGGCTTGCACCTACAATACTGCAGCACTAGTAGGGGTTTTTGCTAGATTGAATCATCACAATTCACAAGGGAATAATGAAACCCCTTTGATAGCTTCTAGTTAA 1557 0.4714 MMDDRVGEMKKGKVEKNTLSLCLALLSLIPFCHSFNYGQALSQSLLYFESQRSGRLPYNQRLTWRHHSALTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITLLSWATIQYGQQIAAAGEYAHALEAIKWGTDYFIKAHTQPNVLWVQVGDGDTDHYCWQRPEDMTTSRRAYKVDANNPGSDVAGETAAALAAASIVFRRTNPHYSQLLLHHAQQLFEFGDKYKGKYDESVGVAKGYYGSVSGYMDELLWAAIWLYRATQKDEYFNYLLENANDFGGTTWAITEFSWDVKYVGVQTIASMFLVEDNKHKKHQVILEQYRSKAQHYLCACLNLNNATNVDRTPGGLLYIRQWNNMQYVATASFLLTLYSDHLLATNQKLNCPKAEVGPHEMFAFAKSQVDYILGSNPMGMSYLVGYGPNFPKKVHHRGSSIESFGENKGFIGCTQGYDNWYGRAEPNPNVLVGALVGGPDIKDQFKDERRNFIQTEACTYNTAALVGVFARLNHHNSQGNNETPLIASS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01964 518 PANTHER ENDO-1,4-BETA-GLUCANASE 9 507 - -
Cca05g01964 518 Pfam Glycosyl hydrolase family 9 37 497 IPR001701 GO:0004553|GO:0005975
Cca05g01964 518 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Cca05g01964 518 PANTHER ENDOGLUCANASE 9 507 - -
Cca05g01964 518 Gene3D - 33 505 IPR012341 GO:0005975
Cca05g01964 518 SUPERFAMILY Six-hairpin glycosidases 34 508 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01964 Cca-Chr5 39438461 39441877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01964 35 500 Glycoside Hydrolase AT2G32990 74.946 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01964 - - gmx:100802346 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01964 05 39438461 39441877 Cca05g01964 05 39438461 39441877 ECH