Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01956 ATGCCATCTTCAACCACCTTATTGACCATTTTGATTCTGACACTGTCCTTTCTCCCCATTGCCCTCAGTTCCCATATTCAAGCCTGTAGCGAACCGTTCCTCAAACTAGCGCAACAAAGAAACATCTCAGACTGCAAGAGGCTGCGCACTCTTGGCGCGGAATTTGCATGGTCCTACCACAATGGCACCAACAGCTCCACCGTGCTTGAAATCTTGTTCGGTGCCACACTCGACGCCCCACAAGGGTGGATGGCGTGGGGTGTGAACCCGGGAAAAAGGCCTGAGATGATTGGAACCAAAGCCATCATAGGCATCAAACTCTCCAATGGGACACTGGGAGTGAAGACATACGACATCACAAAGGAGACCAAACACAATTGCAATCTTTTTCCGTCAGACATTGGACTTGGTTTGTCCGCTGCCAATATGTTGATGAGGAGAGAGGTGTTTAATAATGTGTACACCATATATGCTAGATTGACCCTCCCTTCTGAAGTGTACAACGTTACGCGGCTGAACCATGTGTGGCAAGTTGGTTATCACATTGAAGGTGACCGTCCCCTTCGCCATCCAACAACTCTTCGGAATGTCGACAGCACAGAGGTTATGAATATGACTTCCAGCTCCGGTCACAGCACTGGACAGTACCGGAGTTTCCTTAGATCGGTACATGGAGTCCTAAACATCATAGGGTGGGGAACACTATTGCCGATTGGAGTAATAATTGCAAGGTACTTTCGAGTGTTTCCTTTTCAATGCGATCCAATGTGGTTTAACCTGCATATTGGTTGCCAATTAACTGGTTTTCTCGTGGGAACCGCTGGATGGGCTATCGGACTAAGTCTCGGACATTCTTCAAGGTACTACACCTTCCACACTCATCGAATCTATGGCATTCTCATATTCACCTTTAGCACAGTCCAGATGCTGGCTTTTCGCTTAAAGCCGGAGGTGACCGATGATTACCGAAAGTATTGGAACATGTACCATCATTTCCTTGGATATGGACTGTTGGCGATCATATTCATAAACATATTCAAAGGAATTTCGATTTTGGAAGGGGGAGATGGATGGAAGTGGGGATACATTGGAAATCTTGCTTTCTTGGGTGCCATCGCATTTGGTTTGGAGGTTTTCACATGGATTCGCTTCTTCATGGACAAAGCCAAGGCCAGGAGTGAGAACGATGAAGCAATCAAACATGATAGAAACAAGGAAAAGCAAGACTCAGTTGAAGCACCCAAACCCACCAAGACCTAA 1260 0.4659 MPSSTTLLTILILTLSFLPIALSSHIQACSEPFLKLAQQRNISDCKRLRTLGAEFAWSYHNGTNSSTVLEILFGATLDAPQGWMAWGVNPGKRPEMIGTKAIIGIKLSNGTLGVKTYDITKETKHNCNLFPSDIGLGLSAANMLMRREVFNNVYTIYARLTLPSEVYNVTRLNHVWQVGYHIEGDRPLRHPTTLRNVDSTEVMNMTSSSGHSTGQYRSFLRSVHGVLNIIGWGTLLPIGVIIARYFRVFPFQCDPMWFNLHIGCQLTGFLVGTAGWAIGLSLGHSSRYYTFHTHRIYGILIFTFSTVQMLAFRLKPEVTDDYRKYWNMYHHFLGYGLLAIIFINIFKGISILEGGDGWKWGYIGNLAFLGAIAFGLEVFTWIRFFMDKAKARSENDEAIKHDRNKEKQDSVEAPKPTKT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01956 419 ProSiteProfiles Cytochrome b561 domain profile. 188 385 IPR006593 -
Cca05g01956 419 Pfam Protein of unknown function (DUF568) 96 204 IPR045265 -
Cca05g01956 419 SMART 561_7 223 349 IPR006593 -
Cca05g01956 419 MobiDBLite consensus disorder prediction 393 419 - -
Cca05g01956 419 ProSiteProfiles DOMON domain profile. 51 179 IPR005018 -
Cca05g01956 419 PIRSF UCP037471 2 411 IPR017214 -
Cca05g01956 419 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 404 - -
Cca05g01956 419 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 404 - -
Cca05g01956 419 CDD Cyt_b561_FRRS1_like 198 378 - -
Cca05g01956 419 Gene3D - 201 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01956 Cca-Chr5 39370611 39373033 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01956 - - gmx:100791697 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01956 05 39370611 39373033 Cca05g01956 05 39370611 39373033 ECH