Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01944 ATGGAGGACATGGACGAGATCGATGCCGTTCCTCAGGTTTACATGGCTTGCATCCTAAATGGTCATAGAGTAGGAGTTTCTTATTATGATTCCACCCTTCGCCAACTTTATGTACTTGAAGTTTGGGATGATGGTGACAATGGTTTTCCAGTTATTGATTTGGTGAAATATCAAGCAAACCCATTGGTTATTTACACAAGCACTAAAAGTGAAGAATCCTTCTTGTCTGCTCTGCAACGAAGTGATGGAGTAGCCGAGTCTCCTACAGTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCATAGATTAATTTACCTGCGGGTGGTGGGGATGGATGGTGGATTAAATGTCAAGGAGAGGATTTACTATTTGAGTTCCATGATGGACATGGGTAGTGAAGTACAAGTTCGTGCTAGCGGTGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAGTCTGGAAACACATCAATCACAATAGATTCAGTAGTAGAAATTTCATTAAATAACTTTCTCAAACTTGACACAGCAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTATGATGTTTTTCTCATACATTTTCCCCATTGCAGGAATTGGTTCTTAAGGCCTATACTTGATCTTGAAGTTCTAAACTATCGTTTAAATTCTATATCTTTCTTTCTATGCTCAGAAGAACTTATTGCTTCTTTGCGGGAAACCTTGAAATCTAAATTTGACTCTCCAAGCTCTATATGCACTAGCTCTGATTGGACAGCCCTGCTGAAGAGTATTTGTGCGCTGTTGCATGTAAACAAGATTTTTGAAGTTGGAATTTCCGAAGGTCTCCGAGAAGAATTGAAGTATTTGAACTTGGATATTGTTGAGAAGGCAAGTTCATGCATAACAACTGATCTTGCTTATGTCTATGAGCTGGTAATTGGTGTTATTGATGTAAATAGAACTAAAGAGAAGGGATATGCGACAGTGGTGAAAGAAGGTTTCTGTGAAGAGTTGGATGAGCTGAGGCAGATATACGAGGAACTCCCTGAATTTCTGGAAGAGGTTTCATCTTTGGAAATAGCACAACTTCCCGCTCTATGCAAGAACAAGCGCATTCCTTGTATTGTTTATATACAGCAAATAGGTAGATATTTAATGTGTATCGTTGAAGAAAAAATTGAAGAAACCACCCTGGAGAAACTTGTAGATTGGGAATACACATTTTGTGATACGGATGAAGAGACAAAAAGATACTTCTATCGTACGCCAAAGACACGAGAATTGGACAATCTGCTGGGAGATATCCATCATAAAATTCTAGACATGGAGAGGGCAATCACTAGAGACTTGTTTTCACGCATATTGTTGTTCTCAACCCATTTGATAAAGGTGGCAACTTTTGCAGCTGAACTAGACTGctttttatcaATGGCATTGGTTGCTCGGCAAAACAATTATGTCAGGCCTTTGTTGACTGAAGAAAATTTGCTCGATATAAAAAATGGAAGGCATGTTTTGCAGGAAATGACTGTAGACACATTTATTCCTAATGACACTAAGATTCTTCATGATGGAAGAATTAATATCATCACTGGTCCTAATTTTTCGGGGAAAAGTATCTATATAAAGCAGGTTGCTACAATTGTTTTTCTCTCCCACATTGGCAGTTTTGTGCCAGCTGATGCCGCAACTGTGGGTCTGACAGATAGAATATTTTGTGCAACAGGGAGCAGGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAATTGGAATGATGCTCAGGCATGCTACTTCGCGATCTCTCTGTCTGGTGGATGAATTTGGTAAAGGCACTCTTACAGAAGATGGCATTGGTCTACTTGCTGGGACCGTAAATCACTTTGTCACGTGTGATGAACCTCCAAAGGTTTTTGTGTGCACTCATCTCATGGATTTATTGCATGGGCATTCCTTGACCAAGTCTGAGCAGATTAAGTTTTACACAATGAGTATACTGAGGCCGGACGACAATTCCTCACGTGTTGAAGACATTGTCTTTTTATACAGGCTTGTCCCTGGGCATGCACATCATAGCTATGGTATGCTTTTGCTTTACTGCGCTGTTCATGCAGGTGTACCAGACGAAATCATAAAAAGAGCAGCAGCAGTGTTGGATGCCGTTTCAAACAATGATCATGTTGAGCGGTTATGCAATGAGAATATCTCTGCTCAAGATCGTCAATACAAGGATGCCATGGAGAAATTGTTGGATTTCGATATTGACAAAGGCGACTTAAAACTTTTCTTTGAGGATATATTTTTAATGCATCGTGACTGA 2394 0.3952 MEDMDEIDAVPQVYMACILNGHRVGVSYYDSTLRQLYVLEVWDDGDNGFPVIDLVKYQANPLVIYTSTKSEESFLSALQRSDGVAESPTVKLVKSSIFSYEQAWHRLIYLRVVGMDGGLNVKERIYYLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSVVEISLNNFLKLDTAAHEALQIFQIDKHPSHMGIGRAKEGYDVFLIHFPHCRNWFLRPILDLEVLNYRLNSISFFLCSEELIASLRETLKSKFDSPSSICTSSDWTALLKSICALLHVNKIFEVGISEGLREELKYLNLDIVEKASSCITTDLAYVYELVIGVIDVNRTKEKGYATVVKEGFCEELDELRQIYEELPEFLEEVSSLEIAQLPALCKNKRIPCIVYIQQIGRYLMCIVEEKIEETTLEKLVDWEYTFCDTDEETKRYFYRTPKTRELDNLLGDIHHKILDMERAITRDLFSRILLFSTHLIKVATFAAELDCFLSMALVARQNNYVRPLLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILHDGRINIITGPNFSGKSIYIKQVATIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTVNHFVTCDEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSILRPDDNSSRVEDIVFLYRLVPGHAHHSYGMLLLYCAVHAGVPDEIIKRAAAVLDAVSNNDHVERLCNENISAQDRQYKDAMEKLLDFDIDKGDLKLFFEDIFLMHRD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01944 797 Pfam MutS domain V 550 745 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 Pfam MutS domain III 225 499 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 Gene3D - 223 411 - -
Cca05g01944 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 746 IPR027417 -
Cca05g01944 797 ProSitePatterns DNA mismatch repair proteins mutS family signature. 626 642 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 SUPERFAMILY DNA repair protein MutS, domain III 225 506 IPR036187 -
Cca05g01944 797 SMART DNAend 211 531 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 Gene3D - 507 782 IPR027417 -
Cca05g01944 797 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 21 778 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cca05g01944 797 PIRSF MSH2 1 783 IPR011184 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 Pfam MutS family domain IV 354 458 IPR007861 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 SMART mutATP5 546 744 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cca05g01944 797 PANTHER MUTS PROTEIN HOMOLOG 5 21 778 - -
Cca05g01944 797 CDD ABC_MSH5_euk 519 731 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01944 K08741 - gmx:100797567 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01944 05 39244724 39259638 Cca05g01944 05 39244724 39259638 ECH