Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01930 ATGGCATCGTGGTGCAGTGCTCGGTGCTTCCATATTCCGGCGATGGATGCCGGCGCTTTCCGCAGCCGCGCCTCATTGGCCGCCGGCGTAGGGTGCTTGTCGGTGGCCGGCACCTCCTTCTGGCGCTCCTCCTCCTCACCGAAGCGCTCTTTGCCGTTCACATGCTTGAGCATTTCTTCCGATACTCGTATTAAGGAAAGTGTTCAAACCGAAGGGGCACCAGCGGCTTTGGGACCGTATTCTCAAGCAATCAAATCCAACAACCTTCTTTTTGTGTCTGGTGTTCTTGGCCTTGTTCCCGAGACGGGGAAGTTCGTATCTGATAATGTTGAAGATCAAACTGAACAGCTTCTCAAAAACATGGGGGAAATCCTTAAAGCTGGTGGTGCCAGCTACTCATCAGTTGTCAAGACAACAATTATGTTGGCTGACTTGAAGGACTTTAAGAAGGTCAATGAGATATATGCAAAATACTTCCCTTCACCGTTCCCTGCTCGTTCAACTTATCAAGTAGCTGCCTTGCCATTGGATGCCAAGATCGAAATTGAGTGCATAGCGACTCTATAA 567 0.4991 MASWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDTRIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEIECIATL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01930 188 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 1 188 IPR006175 -
Cca05g01930 188 ProSitePatterns Uncharacterized protein family UPF0076 signature. 164 182 IPR019897 -
Cca05g01930 188 SUPERFAMILY YjgF-like 65 188 IPR035959 -
Cca05g01930 188 Pfam Endoribonuclease L-PSP 72 187 IPR006175 -
Cca05g01930 188 Gene3D - 63 188 IPR035959 -
Cca05g01930 188 PANTHER PERCHLORIC ACID SOLUBLE TRANSLATION INHIBITOR-LIKE PROTEIN 1 188 - -
Cca05g01930 188 TIGRFAM TIGR00004: reactive intermediate/imine deaminase 66 187 IPR006056 -
Cca05g01930 188 CDD YjgF_YER057c_UK114_family 80 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01930 Cca-Chr5 39113561 39117048 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01930 K09022 - gmx:100527559 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01930 05 39113561 39117048 Cca05g01930 05 39113561 39117048 ECH