Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01922 ATGGTTTTGTTAGTGGTCTTTGTTCATTGGATTCCTTGGCAAACAAACAGAATATCTGAGTTGTTCTGCTTTTGCTTTGCTGTCTTCACAGATTCTGTCATGGAGAATAGTGGAGGCGGTGCCCTTTTGAGGAATAGAAGGTTCGAGAGCTTCTTGAATACGAGCTCTGGCCAAAGTGTGGAAGAAACTCCTAGAATTTTGGTGAAAGATGAATCGGGAGAAAGGCCAAGGAATGATGTCTATGCAGATGATGATGATGGGTGGGTTTCAGCAATCGTATCTTGGGTCAGAATTGTTACATGTTTTGTGTCTATGATGGTAACAACATTCGTATGGGCATTGATCATGATCGTGCTTATACCATGGCCATATGAGAGGGTTAGACAAGGAAATATTTATGGCCATGTGACAGGTAGAATGCTGATGTGGATTCTTGGTAATCCTGTAAAGATTGAAGGTGCTGAGTACAATAACGAGAGGGCCATTTACATTAGTAATCATGCATCTCCAATAGACATATTTCTTATAATGTGGTTGACTCCTACAGGCACTGTAGGCATTGCCAAGAAGGAGATAATATGGTATCCTTTATTTGGGCAACTTTATGTTTTGGCCAACCATCTTCGTATAGACCGATCCAACCCAACTGCAGCTATTGAGTCCATGAAAGAGGCAGCACGTGCAGTTGTGAAAAACAATCTGTCCCTGATCATTTTTCCTGAGGGTACAAGGTCTAAGAATGGACGACTACTTCCTTTCAAAAAAGGTTTTGTTCATTTAGCACTACAATCTCGCCTTCCAATAGTTCCAATGGTCCTGACAGGTACTCATTTAGCATGGAGGAAAGGAAGTTTGCATGTTAGACCAGCACCTCTCACTGTCAAGTATCTTCCTCCTATAAGTACTGAAAATTGGAAGCCTGACAACATTGATGACTATGTTGAAATGATGCACAAACTATATGCTGAACACCTTCCAGAGACCCAGAGGCCTCTGCCATGA 1002 0.4182 MVLLVVFVHWIPWQTNRISELFCFCFAVFTDSVMENSGGGALLRNRRFESFLNTSSGQSVEETPRILVKDESGERPRNDVYADDDDGWVSAIVSWVRIVTCFVSMMVTTFVWALIMIVLIPWPYERVRQGNIYGHVTGRMLMWILGNPVKIEGAEYNNERAIYISNHASPIDIFLIMWLTPTGTVGIAKKEIIWYPLFGQLYVLANHLRIDRSNPTAAIESMKEAARAVVKNNLSLIIFPEGTRSKNGRLLPFKKGFVHLALQSRLPIVPMVLTGTHLAWRKGSLHVRPAPLTVKYLPPISTENWKPDNIDDYVEMMHKLYAEHLPETQRPLP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01922 333 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 40 329 - -
Cca05g01922 333 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 40 329 - -
Cca05g01922 333 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 90 328 - -
Cca05g01922 333 SMART plsc_2 161 276 IPR002123 GO:0016746
Cca05g01922 333 TIGRFAM AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 158 273 IPR004552 GO:0003841|GO:0008654|GO:0016020
Cca05g01922 333 CDD LPLAT_AGPAT-like 139 321 - -
Cca05g01922 333 Pfam Acyltransferase 150 273 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01922 Cca-Chr5 39050971 39054017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01922 51 284 Acyl Lipid Metabolism Gene Families AT4G30580 28.980 1.25e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01922 K13509 - pvu:PHAVU_006G042300g 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01922 05 39050971 39054017 Cca05g01922 05 39050971 39054017 ECH