Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01517 ATGGGACATGTGAAGTTGCAAACACAAACTGGCATCAATGCAATAGAAGAGGGATCTGAGCAGTTTGATGCTGGATATCCTAACAAAACTACTGTGGCATGCATGATCAATGCAGAAATTGGTGCTGTTTTGGCTGTCATGAGAAGAAATGTTAGATGGGGAGTTCATTATATGTCAGATGATGATCAATTGGAGCATTCCCTTGTTCAGTCTCTGAAGGCACTAAGGAGGCAAATTTTTTCATGGCAGAATCAGTGGCATGTCATAAGCCCGGCATTGTATCTCCAGCCTTTTCTGGATGTGATTCAATCTGATGAAACTGGTGCACCAATTACTGGTGTTGCTCTATCATCTGTTTACAAGATCTTAACATTGGATGTAATTGATGAAAACACTGTTAATGTCGGGGATGCCATGCACTTGGTAGTTGATGCTGTCACGAGTTGCAGGTTTGAGGTGACTGATCCTGGATCAGAAGAAGTGGTATTAATGAAGATATTACAAGTTCTTCTAGCATGTGTGAAAAGTAAAGCATCTGTGATGCTGAGTAACCAACATATTTGCACCATAGTGAATACTTGTTTCCGTATAGTTCATCAAGCAGGAACCAAAAGTGAGTTGTTGCAGCGGATAGCACGTTACACAATGCATGAACTTGTTCGGTGTATTTTTTCTCACCTTCAAGATATTAACAACACAGAACTTGCATTGATAAATGGGGAAACTGCTTTAAAACAAGAGACTGGTGGGCTAAGTAACGAGCATAATTCTGCAAACAGACAATTGGAGAATGGGAGTTTGAATTCTGCAAGTGATGGTCAACCCTTATCCACAGGAATTGCTTCTAGTACTGTGAGTGATGTGGCAGGGACTGTAGTGGATGAAGACACAGCTATTGCTAGCAATGGCAAGGGGACTGATCCGAGTGAATTGCAGCTTATGAAGGAACCATATGGGATTCCCTGCATGGTGGAAATATTTCACTTTTTGTGTTCTTTGTTGAATGTTGTTGAACACATGGGAGTGAGTCCTCGATCAAACACAATAGCATTTGATGAAGACGTGCCTCTTTTTGCCTTAACTTTGATTAATTCAGCCATAGAGTTGGGAGGGGCTTCCTTTCACCGACACCATAGATTGCTGAGCTTAATTCAGGATGAATTATTCCGCAATCTTATGCAATTTGGTTTGTCAATGAGTCCTCTTGTACTTTCAATGGTATCTAGCATTGTTCTAAATTTGTATCATCATCTTCGCACAGAACTCAAATTACAGCTAGAAGCATTTTTTTCTTGTGTAATTTTGAGGCTTGCACAAAGCAAATATGGAGCTTCATATCAGCAACAGGAAGTTGCCATGGAGGCCCTTGTTGACTTTTGCAGGCAAAAAACATTCATGGTGGAGATGTATGCCAACTTTGACTGTGACATAACTTGCAGTAATGTCTTTGAAGACATTGCTAATTTGTTGTCCAAAAGTGCATTTCCTGTGAACAGTCCATTGTCTTCCATGCATATTCTTGCTTTGGATGGTCTTATTGCTGTCATGCAAGGAATGGCTGAAAGGATAGGCAATGGATCTTTAAGTTCTGAACAATATCCTGTGAATCTTGAGGAGTATACTCCATTCTGGCTGGAAAAGTGTGAAAATTTCAGTGATCCAAATAATTGGGTTCCTTTTGTATGCCGGAGAAAGTACTTCAAGAGAAGATTGATGATTGGAGCCGATCATTTTAATCGTGATACTAAGAAAGGTCTTGAGTTTCTCCAAGGATCACATCTTTTACCTGACAAACTTGATCCCCAAAGTGTTGCCTGCTTTTTCAGATACACTGCTGGGTTGGATAAGAATCTCATTGGTGATTTTCTAGGAAATCATGATGAATTCTGTGTTGAGGTTCTTCATGAATTTGCTAGAACATTTGATTTCAAAGACATGATGTTAGACACTGCCCTACGTCTATTTTTGGAGACTTTCAGACTTCCTGGAGAATCACAGAAGATACAGAGGGTGCTTGAAGCTTTCTCCGAGAGATATTATGAACAGTCTCCTCATATCCTAGCCAATAAGGATGCTGCTCTGTTGTTATCATACTCAATTATAATGCTTAACACAGATCAGCACAATTCGCAGGTCAAAAAGAAGATGACAGAAGATGATTTTATCCGAAATAATAGGCGAATAAATGGGGGCAGTGATCTACCTCGAGAGTTCCTGACGGAACTTTACCATTCAATATGTAAAAATGAGATCCAGACAACTCCTGAGCAAGGTTCTGGTTTTCCTGAAATGACCCCAAGTCGGTGGATTTATCTCATGCACAAATCAAAAAAATCTGCTCCATTCATCGTTTCTGATTCTGAAGCATACCTTGATTATGACATGTTTGCTATATTGTCTGGTCCAACAATTGCTGCCATTTCTGTAGTATTTGATAATGCTGAGAATGCAGAGGTATACCAAACATGTATGGATGGGTTCATAGCTGTTGCAAAGATAGCAGCTTACTATCATCTAGAAAATATACTGGATGATTTGGTTGTGTCACTTTGTAAGTTTGTAACTGTTTTTGATCCATTATCTGTTGAGGAGTCAATCCTAGCCTTTGGAGATGACACGAAAGCAAGAATGGCAACTGAGACAGTTTTCACTATTGCAAATAGGTATGGTGATTACATCCGCACAGGGTGGAGGAATATTCTTGATTGCATCCTAAAATTTCACAAGTTAGGTCTTCTTCCTGCACGAATGGCCAGTGATGCAGCTGAAGAGTCAGAGCTTTCTACAGAAACTGAGCATGATGGGGGGAAGCGTAATACTAATTCTTTATCTTTATCCCATCTTCCATCTGTTAGTACTCCAAAGAAATCCTCAGGATTGATGAGCAGGTTTAGTCAACTCTTATATCTTGGCACTGAAGAGCCAAGATCAGTACCTACTGAGGAACAACTTGCTGCTCAGCAGTCCACCCTTCAAACAATTCAGAAGTGTCACATTGACAGCATATTCTCTGAGAGTAAATTTTTGCAGGCTGATTCTCTATTGCAGCTTGCAAAAGCACTCACTAGTGCAGGAGTGCGGTCTAAGAAAGGGAACAGCTCATTTGAGGATGAAGATACTGTGGTTTTCTGCCTGGAGTTACTGGTAGCCATCACTCTGAATAACAGGGATAGAATAGAACTTCTTTGGCAGGGTGTTTATGAGCATATTTCCAATATTGTTCAGTCAACTGTGATGCCTTGTGCATTGGTAGAGAAGGCTGTTTTTGGCCTCCTACGGATTTGTCATCGCTTGCTTCCCTACAAAGAGAACATTACTGATGAACTTCTGAGGTCTCTGCAACTTGTCCTGAAGCTTGATGCACGTGTTGCCGATGCATACTATGAGCAGATTACACAGGAAGTTAGTCACCTCATGAAGGCAAATGCTTCTCACATTAGATCTCATTTAGGATGGCGGACGATTACATCACTGCTTTCCATCACTGCTAGACACCTGGAAGCAGCTGAGGCTGGGTTTGATGCACTGGTGTTCATTATGTCAGATGGAGCCCACTTGCTTCCCGCTAATTATGTTCTCTGTGTAGATGCTGCGAAGCAGTTTGCTGAATCTCGTGTTGGACAGGTAGAACGGTCTGTAATGGCCCTTGATCTTATGGCAGGGTCTGTCAGTTGTTTAGAGAAGTGGACTAATGATGCCAAGCAAGCAGCAAAAGAAGAGGAGGTGGCAAAGATGTTACAGGATATTGGGGACATGTGGTTGAGGCTCATACAGGGAATAAAAAAACTATGTCTAGACCAGAGAGAGGAGGTTAGAAACCATGCATTGTTATCTTTGCAAAATTGCCTTACAGGATCAGTTGGGGTTAATCTCTCACATAGCTTGTGGTTACAATGTTTTGATCAAGTGATCTTCACTGTGGTTGATGACCTCCTTGAAATTTCTCAGACACACTCTCAGAAGGAATACCGGAACATAGAAGGAACACTTGTTCTTGCTTTGAAGCTCTTGTGTAAAATTTTCCTCCAGTTAATCCAAGCCCTATCACAGTTGACTGGCTTCAGTGAATTATGGTTGGCTGTTCTAAGTCGGTTAGAATCTTATATGAAAGTGAGAGTTAGGGGAAGGAGAAGCGAGAAGCTTCAGGAGCTGGTACCTGAGCTACTGAAGAACATATTGCTTGTTATGAAAGCAACTCGGGTACTAGTGCGAAGCAGTAGTGTAGATGGAAATAGTTTATTTGAACTGACATGGCAGCATATAAATAATATTGCTCCATCATTGAAATCTGAGTTGTTTCCTGAGCAAGACACTGAAAAAGTTGAAGGTGTGAGACCTGATGAAAACAATTCTGTGTCTTCAAAAGAAACAGCAGGTCAAGATGGTCCTGGTATTGGTTAA 4401 0.4097 MGHVKLQTQTGINAIEEGSEQFDAGYPNKTTVACMINAEIGAVLAVMRRNVRWGVHYMSDDDQLEHSLVQSLKALRRQIFSWQNQWHVISPALYLQPFLDVIQSDETGAPITGVALSSVYKILTLDVIDENTVNVGDAMHLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASVMLSNQHICTIVNTCFRIVHQAGTKSELLQRIARYTMHELVRCIFSHLQDINNTELALINGETALKQETGGLSNEHNSANRQLENGSLNSASDGQPLSTGIASSTVSDVAGTVVDEDTAIASNGKGTDPSELQLMKEPYGIPCMVEIFHFLCSLLNVVEHMGVSPRSNTIAFDEDVPLFALTLINSAIELGGASFHRHHRLLSLIQDELFRNLMQFGLSMSPLVLSMVSSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSKYGASYQQQEVAMEALVDFCRQKTFMVEMYANFDCDITCSNVFEDIANLLSKSAFPVNSPLSSMHILALDGLIAVMQGMAERIGNGSLSSEQYPVNLEEYTPFWLEKCENFSDPNNWVPFVCRRKYFKRRLMIGADHFNRDTKKGLEFLQGSHLLPDKLDPQSVACFFRYTAGLDKNLIGDFLGNHDEFCVEVLHEFARTFDFKDMMLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPHILANKDAALLLSYSIIMLNTDQHNSQVKKKMTEDDFIRNNRRINGGSDLPREFLTELYHSICKNEIQTTPEQGSGFPEMTPSRWIYLMHKSKKSAPFIVSDSEAYLDYDMFAILSGPTIAAISVVFDNAENAEVYQTCMDGFIAVAKIAAYYHLENILDDLVVSLCKFVTVFDPLSVEESILAFGDDTKARMATETVFTIANRYGDYIRTGWRNILDCILKFHKLGLLPARMASDAAEESELSTETEHDGGKRNTNSLSLSHLPSVSTPKKSSGLMSRFSQLLYLGTEEPRSVPTEEQLAAQQSTLQTIQKCHIDSIFSESKFLQADSLLQLAKALTSAGVRSKKGNSSFEDEDTVVFCLELLVAITLNNRDRIELLWQGVYEHISNIVQSTVMPCALVEKAVFGLLRICHRLLPYKENITDELLRSLQLVLKLDARVADAYYEQITQEVSHLMKANASHIRSHLGWRTITSLLSITARHLEAAEAGFDALVFIMSDGAHLLPANYVLCVDAAKQFAESRVGQVERSVMALDLMAGSVSCLEKWTNDAKQAAKEEEVAKMLQDIGDMWLRLIQGIKKLCLDQREEVRNHALLSLQNCLTGSVGVNLSHSLWLQCFDQVIFTVVDDLLEISQTHSQKEYRNIEGTLVLALKLLCKIFLQLIQALSQLTGFSELWLAVLSRLESYMKVRVRGRRSEKLQELVPELLKNILLVMKATRVLVRSSSVDGNSLFELTWQHINNIAPSLKSELFPEQDTEKVEGVRPDENNSVSSKETAGQDGPGIG 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01517 1466 SUPERFAMILY Sec7 domain 565 753 IPR035999 GO:0005085|GO:0032012
Cca05g01517 1466 SMART sec7_5 564 751 IPR000904 GO:0005085|GO:0032012
Cca05g01517 1466 ProSiteProfiles SEC7 domain profile. 560 749 IPR000904 GO:0005085|GO:0032012
Cca05g01517 1466 SUPERFAMILY ARM repeat 352 1395 IPR016024 -
Cca05g01517 1466 MobiDBLite consensus disorder prediction 938 957 - -
Cca05g01517 1466 MobiDBLite consensus disorder prediction 1432 1466 - -
Cca05g01517 1466 MobiDBLite consensus disorder prediction 923 957 - -
Cca05g01517 1466 CDD Sec7 568 751 IPR000904 GO:0005085|GO:0032012
Cca05g01517 1466 Pfam Sec7 domain 568 751 IPR000904 GO:0005085|GO:0032012
Cca05g01517 1466 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 11 1456 - -
Cca05g01517 1466 MobiDBLite consensus disorder prediction 248 275 - -
Cca05g01517 1466 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 321 482 IPR032691 -
Cca05g01517 1466 Gene3D - 644 761 IPR023394 -
Cca05g01517 1466 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 1456 - -
Cca05g01517 1466 Gene3D - 561 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01517 Cca-Chr5 34242621 34250260 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01517 K18443 - gmx:100784083 2647.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01517 05 34242621 34250260 Cca01g00379 01 4401122 4409700 PCT