Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01389 ATGGAACAGATGAAACCAAACACCGCTAACTCTTCCCCTCTCACCCCACTCGGCTTCTTGGACAGAGCAGCCACCGTCTACGGCGACCCTCCTTCAATCATCTACAACCAAACCACCTTCACCTGGTCCCACACGCGCCGCCGCTGCCTCCAGCTCGCCTCCGCCCTCTCCTCCCTCGGAATCCGTCCCGGCCACGTCGTCTCCGTCGTCGCCCCCAACATCCCCGCCATGTACGAGCTCCACTTCGCCATCCCCTTCACCGGCGCCGTTCTCAACAACATCAACACCCGCCTAGACGCGCGCACCGTCTCCGTCATCCTCCGTCACGCGAACTCCACGGTCGTGTTCGTGGACTGCGCCTCACGCGATCTGGTCCTCCAAGCCCTATCCCTCTTCCCTGAAAACACTCAACGCCCAATCCTCATCCTCATCACCGACGACACAGTGGAGAAAACCTCACCCAGCGTTGATTTCATGGACACGTATGAGGGTCTCGTGAGCAAGGGCGATCCAAGCTTCGAGTGGGTTCAGCCCAACAGCGAGTGGGACCCCATGACTCTCAACTACACCTCAGGAACGACGTCGTCTCCCAAAGGTGTTGTTCACTCCCACAGAGGAGCCCTCATCATGACACTTAGTATCCTTATCGACTGGGCGGTGCCCAAGAACCCAATTTTTCTCTGGACGCTTCCACTGTTCCACGCTAACGGCTGGAGCTTCCCGTGGGGGATCGCAGCCGTGGGCGGCACCAATATATGTGTCCGCAAGTTCGACGCCGAGATTGTTTACTCTCTCATAAAACGCCATCACGTGACTCACATGTGCGGCGCTCCCGTCGTGCTTAACATGCTAACCAACTCCCCCGAAAACAAACCGTTGGAGAAGCCTGTGCAGATTCTCGCCGCCGGAGCGCCGCCGCCTTCGGCGGTGCTCCTCCGGACTGAGGCGCTGGGATTCATGGTGAGCCACGGCTACGGTTTGACGGAAACCGGGGGCCTGGTGGTGTCGTGCGCGTGGAAGGAGAAGTGGAACCGGTTGCCGGCGACGGAGAGGGCGAGACTGAAGGCGCGGCAGGGGGTGAGAATGGTGGGGATGGCGGAGGTGGACGTGGTGGGTCCCACAGGGGAGAGCGTGAAGCACGACGGGGTTAGCATAGGGGAGGTTGTGATGAAAGGAGGGTGTGTGATGTTAGGGTACTTTAAAGACCCCGAAGGAACCGCGAGTTGTTTGAAGAACGGTTGGTTCTACACCGGGGATGTTGGGGTCATGCATGAAGATGGGTACTTGGAAATTAAGGATAGGTCAAAGGATGTTATTATTAGTGGCGGTGAGAACGTGAGCAGTGTGGAGGTGGAGTCGGTGTTGTATAATCACCCGGCGGTGCATGAGGCGGCGGTGGTGGCGAGAGCGGATGAGTATTGGGGAGAGACGCCGTGTGCGTTTGTGAGCTTGAAAGCATGTGTGAAGGAGAAACCCACTGAGAAAGACATAATTGAATATTGTAGGGAGAACATGCCGCGTTACATGGTTCCGAAAACGGTGGTTTTCAAAGATGAGCTTCCGAAAACGTCGACGGGGAAGATCCAGAAGTTCATGCTGAGACAGATTTGCCGAGGACATGGGACGACTCCTCTCTTCTCATTCACTAAGACCCTACAGATTGGTGTCAACTGGTGGCATGTTAGATTCTGA 1692 0.5686 MEQMKPNTANSSPLTPLGFLDRAATVYGDPPSIIYNQTTFTWSHTRRRCLQLASALSSLGIRPGHVVSVVAPNIPAMYELHFAIPFTGAVLNNINTRLDARTVSVILRHANSTVVFVDCASRDLVLQALSLFPENTQRPILILITDDTVEKTSPSVDFMDTYEGLVSKGDPSFEWVQPNSEWDPMTLNYTSGTTSSPKGVVHSHRGALIMTLSILIDWAVPKNPIFLWTLPLFHANGWSFPWGIAAVGGTNICVRKFDAEIVYSLIKRHHVTHMCGAPVVLNMLTNSPENKPLEKPVQILAAGAPPPSAVLLRTEALGFMVSHGYGLTETGGLVVSCAWKEKWNRLPATERARLKARQGVRMVGMAEVDVVGPTGESVKHDGVSIGEVVMKGGCVMLGYFKDPEGTASCLKNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENVSSVEVESVLYNHPAVHEAAVVARADEYWGETPCAFVSLKACVKEKPTEKDIIEYCRENMPRYMVPKTVVFKDELPKTSTGKIQKFMLRQICRGHGTTPLFSFTKTLQIGVNWWHVRF 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01389 563 SUPERFAMILY Acetyl-CoA synthetase-like 11 539 - -
Cca05g01389 563 Pfam AMP-binding enzyme 21 441 IPR000873 -
Cca05g01389 563 Gene3D - 437 539 IPR045851 -
Cca05g01389 563 Pfam AMP-binding enzyme C-terminal domain 450 527 IPR025110 -
Cca05g01389 563 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cca05g01389 563 PANTHER ACYL-ACTIVATING ENZYME 2 541 - -
Cca05g01389 563 Gene3D - 2 436 IPR042099 -
Cca05g01389 563 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 541 - -
Cca05g01389 563 CDD ttLC_FACS_AEE21_like 12 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01389 Cca-Chr5 32197549 32199369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01389 1 538 EF-hand Containing Proteins AT1G21540 62.591 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01389 - - gmx:100779857 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01389 05 32197549 32199369 Cca05g01389 05 32197549 32199369 ECH