Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01388 ATGGAACAGCTCAAGCCAAGCGCCGCTAACTCTTTCCCCCTGGACAGAGCAGCAACCGTCTACGGCGACACTCCTTCAGTCATCTACAACCAAACCACCTTCACCTGGTCCCACACGcgccgccgatgcctccagctcgcctccgccctcacctccctcggcatccgccgcggccacgtcgtctccgtcgtcgcccccAACATCCCCGCCATGTACGAGCTCCATTTCGCCGTCCCCTTCGCCGGCGCCGTCCTCAACAACATCAACACCCGCCTCGACGCCCGCACTGTCTCCGTCATCCTCCGTCACGCGAGTTCCACCCTAGTCTTCGTGGACTGCGCCTCACGCGATCTGGTCCTCCAAGCCCTATCCCTCTTCCCTGAAAACAGTCAACGCCCAATCCTTATTCTCATCACCGACGACACAGTGGAGAAAACCTCACCCAGCGTTGATTTCATGGACACGTACGAGGGCCTCGTCAGCAAGGGCGATCCAAGCTTCGAGTGGGTCCGGCCCAACAACGAGTGGGACCCCATGATACTCAATTACACCTCCGGAACGACGTCGTCTCCCAAAGGCGTGGTCCACTGCCACAGGGGAATCTTCATCGTCACCCTCGATTCACTTATTGATTGGGCGGTGCCCAAGAACCCAATTTTTCTCTGGACGCTTCCACTGTTCCACGCTAACGGCTGGAGCTTCCCGTGGGGGATCGCAGCCGTGGGCGGCACCAATATATGTGTCCGCAAGTTCGACGCCGAGATTGTTTACTCTCTCATAAAACGCCATCACGTGACTCACATGTGCGGCGCTCCCGTCGTGCTCAACATGCTAACCAACTCCCCCGACAACAAACCGTTGGAGAACCCGGTGCAGATTCTCACCGCCGGATCGCCGCCGCCTGCGCCGGTGCTCTTCCGGACTGAGGCGCTGGGCttcgtggtgagccacggctacggtttgacggaaaccgcggggttggtggtgtcgtgcgcgtggaaggagaagtggaaccgggttccggcgacggagagggcgcggctgaagtcgcggcagggggtgaggacggtggggatggcggaggtgaaggtggtgggtccgacgggggagagcgtgaagcgcgatggggtcagcgtaggggagattgtgatgagaggagggtgtatcatgttggggtaccttaaagaccccgaaggaaccgcgagttgtttgaagaatggttggttctacacgggtgatgttggtgtcatgcatgaggatgggtactTGGAAATTAAGGATAGGTCAAAGGATGTTATTATCAGTGGTGGTGAGAATTTGAGCAGCGTTGAGGTGGAGTCCGTGCTGTATGGCCATCCGGCGGTGAATGAGGCGGCGGTGGTGGCGAGACCGGATGAGTATTGGGGTGAGACACCTTGTGCTTTTGTGAACTTGAAGACTGGGTTGAAGAAGAAACCTACGGAAAACGACATAATTCAATATTGCAGGGAGAATATGCCACGTTATATGGTTCCAAAGACGGTGATTTTCAGGGATGAGCTTCCCAAGACTTCTACGGGTAAGATCCAGAAGTTTTTACTCAGACAAATTGCCAAGGACATGGATCCCATTCAAAGTAGAATGTGA 1626 0.409 MEQLKPSAANSFPLDRAATVYGDTPSVIYNQTTFTWSHTRRRCLQLASALTSLGIRRGHVVSVVAPNIPAMYELHFAVPFAGAVLNNINTRLDARTVSVILRHASSTLVFVDCASRDLVLQALSLFPENSQRPILILITDDTVEKTSPSVDFMDTYEGLVSKGDPSFEWVRPNNEWDPMILNYTSGTTSSPKGVVHCHRGIFIVTLDSLIDWAVPKNPIFLWTLPLFHANGWSFPWGIAAVGGTNICVRKFDAEIVYSLIKRHHVTHMCGAPVVLNMLTNSPDNKPLENPVQILTAGSPPPAPVLFRTEALGFVVSHGYGLTETAGLVVSCAWKEKWNRVPATERARLKSRQGVRTVGMAEVKVVGPTGESVKRDGVSVGEIVMRGGCIMLGYLKDPEGTASCLKNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYGHPAVNEAAVVARPDEYWGETPCAFVNLKTGLKKKPTENDIIQYCRENMPRYMVPKTVIFRDELPKTSTGKIQKFLLRQIAKDMDPIQSRM 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01388 541 CDD ttLC_FACS_AEE21_like 11 528 - -
Cca05g01388 541 Gene3D - 4 430 IPR042099 -
Cca05g01388 541 PANTHER ACYL-ACTIVATING ENZYME 14 541 - -
Cca05g01388 541 Pfam AMP-binding enzyme C-terminal domain 444 521 IPR025110 -
Cca05g01388 541 Gene3D - 431 535 IPR045851 -
Cca05g01388 541 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
Cca05g01388 541 SUPERFAMILY Acetyl-CoA synthetase-like 14 533 - -
Cca05g01388 541 Pfam AMP-binding enzyme 15 435 IPR000873 -
Cca05g01388 541 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 14 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01388 Cca-Chr5 32164728 32166971 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01388 1 534 EF-hand Containing Proteins AT1G21540 62.909 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01388 - - gmx:100779857 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01388 05 32164728 32166971 Cca05g01388 05 32164728 32166971 ECH