Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01169 ATGTGTAACCCCAAGCCATCTTCAGCATCCCCATTTCTAAGTCCCACAAAATCCCTCCCCAAAGTTGTGTATCCTTCTCTTGATGATCAAGTTCATGATGAATTGCGCAGATGGCCTACTCTTAATGAGGCTATAGCAGAAATCAAAGCAATAGGGAGGATATCATGCCCAACAGCCATCACTGGTTTACTCTTATACTCAAGAGCCATGATCTCTATGATTTTCCTTGGCTACCTTGGTGAGATGGAGCTAGCAGGAGGGTCTCTCTCCATTGGTTTTGCCAACATCACTGGCTACTCTGTGATCTCTGGTTTAGCCATGGGGATGGAAGCTATCTGTGGCCAAGCATATGGAGCAAAGCAATGGAAGCTTCTTGGCTTGACACTGCAGAGAACTGttctccttctcctctcaacctccatccccatctcgttcATGTGGCTCAACATGAAGAGAATCCTCTTGTGGTCAGGCCAAGACCAAGATATAGCATCAGTGGCACAAACTTTCATCACTTTCTCAATACCTGATCTTTTCCTTCTCTCACTTCTCCACCCTCTAAGAATCTACCTCAGGACACAAAGCATCACATTGCCACTCACATATTGCTCAGCCATCTCAGTGCTTCTCCATGTGCCTTTGAATTTCCTCCTAGTGGTTCACCTCAAGATGGGAATTGCTGGTGTGGCCACAGCAATGGTCTTGACCAACCTCAACCTCATTCTCTTTCTCTCATCTTTTGTCTACTTTTCTGGTGTACACAAGGCCTCATGGGTTCCCCCTAGTGTGGATTGCATCAAGGGGTGGTCCTCATTGCTATCTTTGGCAGTTCCTACTTGTGTCTCAGTTTGCCTTGAGTGGTGGTGGTATGAGTTCATGATAATGCTGTGTGGCCTTTTGGTGAATCCAAAAGCAACCATTGCCTCAATGGGAATACTCATCCAAACAACATCTTTGGTCTATGTGTTCCCATCATCACTCAGCCTTGGTGTCTCCACGAGAGTGGGGAATGAGTTGGGTGCAAACAACCCTGGGAAGGCAAGAGTTTGCATGATAGTCTCACTCTTTTGTGCTGTGGGGTTAGGCCTTGGAGCCATGATGTTCACCACCCTCATGAGGCACCAATGGGGAAGATTCTTCACCAATGACCATGAGATTTTGGAACTCACATCACTAGTTTTGCCAATTGTTGGCCTTTGTGAGCTTGGAAACTGTCCTCAAACCACAGGCTGTGGAGTCCTGAGAGGCAGTGCAAGGCCTACAATTGGTGCCAACATCAATTTAGGCTCATTTTATTTGGTTGGTATGCCAGTGGCTATACTTTTGGGCTTTGTGGCCAAAATGGGGTTTGCAGGGCTTTGGCTTGGGTTGCTTGCAGCCCAAGCCTCATGTGCTGGCCTCATGATCTTTGTTCTATGCAGAACAGATTGGAATGTACAAGTAGAAAGAGCCAAGGAACTCACAAAAacttcaactactactactacttgttctgctgcttctgattctaACTCCAAATTACCTACATTCACCAACTCAGATGCTAACATGAACAAGAATGTTCATGCTTGTCTTGAAGAGATAGTTATTACTGCTGGTGGCGATGAGGTTCACAAGATATCTTCACTTGAAACAGATCCACTGATTATTTCCACCACAAAACACACCGATGAAGTTTAG 1680 0.4357 MCNPKPSSASPFLSPTKSLPKVVYPSLDDQVHDELRRWPTLNEAIAEIKAIGRISCPTAITGLLLYSRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEAICGQAYGAKQWKLLGLTLQRTVLLLLSTSIPISFMWLNMKRILLWSGQDQDIASVAQTFITFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSAISVLLHVPLNFLLVVHLKMGIAGVATAMVLTNLNLILFLSSFVYFSGVHKASWVPPSVDCIKGWSSLLSLAVPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANNPGKARVCMIVSLFCAVGLGLGAMMFTTLMRHQWGRFFTNDHEILELTSLVLPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILLGFVAKMGFAGLWLGLLAAQASCAGLMIFVLCRTDWNVQVERAKELTKTSTTTTTCSAASDSNSKLPTFTNSDANMNKNVHACLEEIVITAGGDEVHKISSLETDPLIISTTKHTDEV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01169 559 PANTHER PROTEIN DETOXIFICATION 27 501 - -
Cca05g01169 559 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 501 - -
Cca05g01169 559 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Cca05g01169 559 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca05g01169 559 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca05g01169 559 TIGRFAM matE: MATE efflux family protein 63 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01169 Cca-Chr5 29206353 29208601 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01169 K03327 - gmx:100783792 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01169 05 29206353 29208601 Cca05g01169 05 29206353 29208601 ECH