Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01166 ATGGCTGTTTCAACCAGTTTCTCCGGTGCAAAGTTGGAGGCTTTGTTGCTGAAATGTGGTTCCTCCAATGCTACCACCACCACTACCCATTTATCTGTTTTTGGCAAAAACAGAAAGACACTTGTTCAGACTCTCAGAGGGTCCATTCGCTGTGAGGTTTCTGCTTCTGATGTTTCACTTGATTCAACGAAGAAAGCCACTAATGTCTCTGCTCTCGAACAGCTTAAGACCTCTGCTGCTGATAGGTATACAAAGGAAAGGAGCAGCATTATGGTTATTGGACTGAGTGTACATACTACACCTGTGGAAATGCGTGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATAGCAGAGCTTTGTAGTCTGAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACAGAATGGAGATATATGTTGTTGCTCTCTCCAAGCACCGTGGTGTCAAAGAAGTCACCGAATGGATGTCCAAAACAAGTGGAATTCCAGTTGCAGACCTTTGCCAGCATCAGTTTCTGCTTTACAACAAAGATGCCACACAGCACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTGTTGGGAGAAGGTCAAATCCTTGCTCAGGTGAAGCAGGTTGTGAAAGTTGGACAAGGAGTTAACGGCTTTGGGAGGAACATTAGTGGACTATTCAAGCATGCAATCACTGTAGGGAAGAGGGTCAGAACTGAGACAAACATTGCTGCTGGAGCAGTTTCTGTTAGCTCAGCAGCTGTTGAACTGGCCCTGATGAAGCTACCTGAAGCCTCACATGCAAATGCAAGGATGTTGGTCATTGGAGCAGGAAAAATGGGAAAGCTTGTGATCAAGCATTTAGTGGCAAAAGGCTGCACAAAGATGGTGGTTGTCAATAGAACTGAGGAGAGAGTTGCATCAATCCGAGAAGAGCTCAAGGATGTTGAGATAACCTACAAACCCCTCTCGGAAATGCTCACATGCGTTGGTGAATCAGATGTGGTTTTCACCAGCACAGCATCCGAGGATCCCTTGTTCTTGAAGGATCATGTCAAGGACCTTGCTCCTGCCACTGATGAAGTTGGAGGCCGTCGCTTTTTCGTTGATATTTCTGTTCCTAGGAATGTTGGATCATGTGTCTCGGATCTTGAGTCTGTGAGAGTGTTCAATGTTGATGACCTTAAGGAGGTTGTGGCAGCTAACAAGGAAGATAGGCTAAGAAAAGCAATGGAAGCTCAAGCTATCATATGTGAAGAATCAAAACAATTTGAGGCTTGGAGGGACTCATTGGAAACTGTTCCTACCATTAAGAAATTGAGGGCATATGCTGAAAGAATAAGGGCGGCTGAACTTGAGAAGTGCCTAGGAAAGATGGGTGATGATATCCCAAAGAAGACACAAAGAGCTGTGGATGACCTTAGTAGAGGTATAGTGAACAAGTTGCTTCATGGGCCAATGCAACACTTGAGGTGTGATGGGAGTGATAGTAGGACTCTGAGTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGATTCGAGCCAAGGTGGAGCAAAAGCCATAG 1614 0.4498 MAVSTSFSGAKLEALLLKCGSSNATTTTTHLSVFGKNRKTLVQTLRGSIRCEVSASDVSLDSTKKATNVSALEQLKTSAADRYTKERSSIMVIGLSVHTTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVKEVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRTEERVASIREELKDVEITYKPLSEMLTCVGESDVVFTSTASEDPLFLKDHVKDLAPATDEVGGRRFFVDISVPRNVGSCVSDLESVRVFNVDDLKEVVAANKEDRLRKAMEAQAIICEESKQFEAWRDSLETVPTIKKLRAYAERIRAAELEKCLGKMGDDIPKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISVLEQKIRAKVEQKP 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01166 537 Gene3D - 249 401 - -
Cca05g01166 537 TIGRFAM hemA: glutamyl-tRNA reductase 90 498 IPR000343 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 93 243 IPR015895 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 Gene3D - 88 248 IPR036343 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 536 - -
Cca05g01166 537 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 412 498 IPR036453 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 Coils Coil 301 321 - -
Cca05g01166 537 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 414 518 IPR015896 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 Pfam Shikimate / quinate 5-dehydrogenase 258 400 IPR006151 -
Cca05g01166 537 ProSitePatterns Glutamyl-tRNA reductase signature. 186 209 IPR018214 GO:0008883
Cca05g01166 537 CDD NAD_bind_Glutamyl_tRNA_reduct 90 412 - -
Cca05g01166 537 PANTHER GLUTAMYL-TRNA REDUCTASE 1 536 - -
Cca05g01166 537 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 89 245 IPR036343 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 Hamap Glutamyl-tRNA reductase [hemA]. 89 516 IPR000343 GO:0008883|GO:0033014|GO:0050661
Cca05g01166 537 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 248 408 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01166 Cca-Chr5 29139999 29144119 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01166 K02492 - gmx:100815985 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01166 05 29139999 29144119 Cca05g01166 05 29139999 29144119 ECH