Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01165 ATGGGAACCCGTTGGAGAAGAGCCTTTTGCACTAGCGACcctgaacctgaacctgaacctgaaccCACCTCTCCTCTATCCTCCCCAGGCCCCAAGCTCAACCTCTCCCTCTTCACAAACACCTTCAAATTCAGAAGTACCTGCGGAATCTGTTCCAGTAGCGTCAAAACAGGTCAAGGAACCGCTATTTACACTGCAGAGTGCGGTCACGCCTTTCACTTTCCCTGCGTCGTTTCCCATGCACGCCCACGCATCTGTCCCGTCTGCCACGCCGCATGGGATCACCTACCGTTTCACCAAAACCACGCCGTCCTTCACAAACATTCCGATTCCCTCACGTCCTACCACCACCACCACCCTCTCCCTTCTCCTCTCTCATGTTCCACGCAAATCCTTCCCATTCCCGAAGCTGATGAAaacaccgaacaacaacaacaacaacaaaaccacgacGCATCCGAGTTCCCTGGCTTTTTCGTCGATCCAAAGCCTCAATCCTCGTCACGACAAAACCACGGTGCTGAATATTCAAGGACCGTCCGAGTCAAGTTGATGCCCGAGTGCGCGGTCATATCGGTTTCTCAAAGCCACCAAACTCGCGCTCTCGTTTTAAGAGTCAAGGCTCcgccgtcgccgtcgccgtcgccgccacagccgcgtcggccgccgATGGATCTCGTCGCAGTGCTAGACGTCGGCAACAGCATGAGCGGCGGAGCGAAGCTTCACATGGTGAAGCGCGCGATGCGTTTGGTTGTCTCGTCGCTCGACGCGTCTGACCGGCTCGCCGTCGTGGCTTCCAAACGGTTGCTACCGCTACGAAGAATGACGACTCAGGGACAACGCTCGGCTCGGCGCGTAGTGGATCGGTTCGCGTGTGACCACGGGAACAGCGTGAGTGAAGAAGCTGTGGAGAAAGCCGCGAAAATTCTCGAAGATCGGAGAGAGAGAAATCCTCTCGCCAGAATCTTGCTTCTATCCGACGGTCACGATAACAACAATCAACGGAGATGCTTAAGCCACGTGTCTTCCGTCCGGTTTACTTGTGTAGAAGTTCCGGTTCATCCGTTTGGGTTCGGGGTTACAAAAACCGGTTCAACACACGAACCGGTTGAGGATAATTTTGTTCAGTTCATAGATAGGACATTGAGTGTGGCGGTGCACGATTTAAGAATTCAGCTTGGCTTTTCCGCGCCGGCTGAAATTCGAGCCGTTTATTCTTGCAGCGGGGGACCCACTGCGCTGAACTCAAGCGCGGCTCGGCTCGGCGATTTATACGCCAGAGAAGAGAAGGAGTTGTTGGTGGAGGTTAGAGTGCCCACGTCAGCATTAGCGACTCACCACGTGATGACAGTGCGGTGTGTCAACAAAGACCCTGCTTCGCAAGAGTTTGTCTACGGCGCGGAACACGCGTTTACCGTGGTGCCGCCAAAGAGTAGTACTAGTGCTTCACTTTGTGGCGGGAGATCCGAGAGGCTGAGGAATGTATTTATCACGAGCCGAGCCGTAGCCGAGTCGCGGAGGCTGGCTAAGCATAGCGAATTCTCGAGCGCTCATCATTTGCTAGCTTCGGCTCGGGCTCTTCTAACGCAGTTTGGCTCGGCTGAGGAGTACGTGCGCGGCTTGGAAGCTGAGCTGGCGGAGCTGCAGTGGCGGAAGCAGCAACCGGGGCGGAGGAGGGAGGGTGAGAGGGTGGTGGATGAGGGCAGTGAGGCGCTGACCCCGACGTCGGCTTGGAGAGCCGCAGAGAAGCTGGCTAAGGTGGCTATGATGAAGAAGTCGTTGAATAAAGTTAGCGACTTGCACGGCTTCGAGAACGCTAGGTTTTAG 1830 0.5197 MGTRWRRAFCTSDPEPEPEPEPTSPLSSPGPKLNLSLFTNTFKFRSTCGICSSSVKTGQGTAIYTAECGHAFHFPCVVSHARPRICPVCHAAWDHLPFHQNHAVLHKHSDSLTSYHHHHPLPSPLSCSTQILPIPEADENTEQQQQQQNHDASEFPGFFVDPKPQSSSRQNHGAEYSRTVRVKLMPECAVISVSQSHQTRALVLRVKAPPSPSPSPPQPRRPPMDLVAVLDVGNSMSGGAKLHMVKRAMRLVVSSLDASDRLAVVASKRLLPLRRMTTQGQRSARRVVDRFACDHGNSVSEEAVEKAAKILEDRRERNPLARILLLSDGHDNNNQRRCLSHVSSVRFTCVEVPVHPFGFGVTKTGSTHEPVEDNFVQFIDRTLSVAVHDLRIQLGFSAPAEIRAVYSCSGGPTALNSSAARLGDLYAREEKELLVEVRVPTSALATHHVMTVRCVNKDPASQEFVYGAEHAFTVVPPKSSTSASLCGGRSERLRNVFITSRAVAESRRLAKHSEFSSAHHLLASARALLTQFGSAEEYVRGLEAELAELQWRKQQPGRRREGERVVDEGSEALTPTSAWRAAEKLAKVAMMKKSLNKVSDLHGFENARF 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01165 609 Pfam RING-like zinc finger 48 77 IPR001841 -
Cca05g01165 609 Gene3D von Willebrand factor, type A domain 225 380 IPR036465 -
Cca05g01165 609 SUPERFAMILY vWA-like 220 360 IPR036465 -
Cca05g01165 609 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 22 609 - -
Cca05g01165 609 SMART ring_2 48 89 IPR001841 -
Cca05g01165 609 MobiDBLite consensus disorder prediction 139 175 - -
Cca05g01165 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 155 IPR013083 -
Cca05g01165 609 MobiDBLite consensus disorder prediction 139 153 - -
Cca05g01165 609 Pfam von Willebrand factor type A domain 226 330 IPR002035 -
Cca05g01165 609 MobiDBLite consensus disorder prediction 1 32 - -
Cca05g01165 609 SUPERFAMILY RING/U-box 42 100 - -
Cca05g01165 609 CDD RING-H2 48 89 - -
Cca05g01165 609 ProSiteProfiles Zinc finger RING-type profile. 48 90 IPR001841 -
Cca05g01165 609 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 22 609 - -
Cca05g01165 609 ProSiteProfiles VWFA domain profile. 225 360 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01165 Cca-Chr5 29118861 29121287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01165 - - gmx:100795015 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01165 05 29118861 29121287 Cca05g01165 05 29118861 29121287 ECH