Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01164 ATGTCCAAGCCACTGCTAGGCATAGGGGAAGAGGAAGGTCAAAGCAATGTCACTTTGTTGGGCTCTTCCTCAGCCACCATGGAGAGTGTTTGCATGAATAGCTCGAAATTGAAAGAACGCAACTATATGGGGTTATCTGATTGTTCATCGGTGGACAGCTCCGCGCCGTCCTTCTCAGATGAGAGTAAAAGTAATCTGAACCTTAAAGCTACTGAGCTCAGGCTGGGGCTTCCGGGATCGCTGTCTCCAGAACGAGATTCAGATCTTTGCTTGAGAAGTTCAATTCAGTTTGATGAAAAACCTTTGTTTCCTTTGCATCCTGCAATTGATGATCATCATTCCTCATCAAAGCCTGCTGTTTTGGGTAACAAAAGAGGGTTCTCTGATGTGATGGGTGGATTCTCAGAGGAGAAATTGCTTGTTAGTTCTGAGGTCAACACAATATTGTCACCCAGGCCTTCTCCTAATGTGGGATTGAAACAAAGCTCTATGCTTGAGAATATTGGGGCTCAGCAAGCCAAAGCCAAAGAACTCGCAACAGCCAAGGTTGGTCTTGAGAGATCTCATGCTGTCAATGAAAGCAGACCAAGTCTTAATGGTTCTCCAAATAACAATAGCTGTGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCGTTGGCCACAGCTTCAAAGAATATTGAAGAAGTAGATGCCAAGGCAGGATCTGGTGCACTGTTTGTAAAGGTAAGTATGGACGGTGCTCCTTACTTAAGAAAAATAGACTTGAAGAATTACTCTGCGTATACCAAATTATCGTCTGCTCTGGAGAATATGTTCAGCTGTTTTACCATAGGTAGGAAAGAATTAGTTTTACTTGAAAAGTTTAGCCTTTTGATTGTTGGAGGCCATTTTGCCAGGATCCAGTTACTGCTTATGTTGATGTGA 954 0.4329 MSKPLLGIGEEEGQSNVTLLGSSSATMESVCMNSSKLKERNYMGLSDCSSVDSSAPSFSDESKSNLNLKATELRLGLPGSLSPERDSDLCLRSSIQFDEKPLFPLHPAIDDHHSSSKPAVLGNKRGFSDVMGGFSEEKLLVSSEVNTILSPRPSPNVGLKQSSMLENIGAQQAKAKELATAKVGLERSHAVNESRPSLNGSPNNNSCAPATKAQVVGWPPIRSFRKNSLATASKNIEEVDAKAGSGALFVKVSMDGAPYLRKIDLKNYSAYTKLSSALENMFSCFTIGRKELVLLEKFSLLIVGGHFARIQLLLMLM 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01164 317 PANTHER AUXIN-INDUCED PROTEIN 23 291 - -
Cca05g01164 317 Gene3D - 242 301 - -
Cca05g01164 317 Pfam AUX/IAA family 71 289 IPR033389 -
Cca05g01164 317 ProSiteProfiles PB1 domain profile. 247 317 IPR000270 GO:0005515
Cca05g01164 317 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 291 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01164 Cca-Chr5 29082109 29087616 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca05g01164 AUX_IAA 2.1e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01164 K14484 - gmx:100815447 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01164 05 29082109 29087616 Cca05g01164 05 29082109 29087616 ECH