Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01160 ATGACTGCAGGTATGGATACTGCTGCAGGTCAAACTCTCTATCCGTTGCACCGTTGCAAAACTGTTCACCTGGTTAGGCATGCCCAAGGAGTTCATAATGTAGCAGGAGAGAAGAACCATGATGAATACAAATCTTACGATTATTTTGATGCACACTTAACCCCTCTCGGCTGGGAGCAGGTTGATAATCTGCGAAAGCACGTGAAGGTGTGCGGACTTTCCAAAAGTATTGAACTTGTTGTCGTTTCCCCATTGTTAAGGACCATGCAAACAGCAGTTGGAGTCTTTGGTGGGGAAGCATACACTGATGGAATTAGAAAACTACCTCTGATGCTGGAAAATGTTGGACACAGCAATCATCTTGCAGTTTCTAGTCTGAACTGCCCTCCATTTATAGCAGAAGAGCTTTGCCGAGAGCAATTAGGGGTTAATCCTTGTGATAAGAGAAGAACCATCACTGAATACCGGAGTATGTTTCCAGCAATTGATTTTTCACTGATTGAAAATGAAGAGGACATTTTGTGGACACCTAACGTCAGAGAGAAGCCAGAAGATGTTTCTGCTAGGGGACTGAAGTTTTTGGAATGGTTGTGGACACGTAAAGAGAAGGAGATAGCAGTTGTTACTCACAGCAGTTTTCTGTTCAATACCCTCCGTGCTTATGGAAATGATTGTCACCCAAATATGAAGAGTGAAATATGCACACACTTTGCTAATTGTGAGCTTCGTTCAATCGTTATCATTGATAGAGGTATGATTGGATCAAGTGAATCAACTACCAACTATCCCGGCAAGATTCCTCGTGGCCCTGATCTTCCCAGTGAAGCTGCTGACTAA 837 0.4325 MTAGMDTAAGQTLYPLHRCKTVHLVRHAQGVHNVAGEKNHDEYKSYDYFDAHLTPLGWEQVDNLRKHVKVCGLSKSIELVVVSPLLRTMQTAVGVFGGEAYTDGIRKLPLMLENVGHSNHLAVSSLNCPPFIAEELCREQLGVNPCDKRRTITEYRSMFPAIDFSLIENEEDILWTPNVREKPEDVSARGLKFLEWLWTRKEKEIAVVTHSSFLFNTLRAYGNDCHPNMKSEICTHFANCELRSIVIIDRGMIGSSESTTNYPGKIPRGPDLPSEAAD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01160 278 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 4 278 - -
Cca05g01160 278 CDD HP_PGM_like 21 92 IPR013078 -
Cca05g01160 278 MobiDBLite consensus disorder prediction 258 278 - -
Cca05g01160 278 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 4 278 - -
Cca05g01160 278 SUPERFAMILY Phosphoglycerate mutase-like 20 250 IPR029033 -
Cca05g01160 278 Gene3D - 15 263 IPR029033 -
Cca05g01160 278 SMART PGAM_5 21 217 IPR013078 -
Cca05g01160 278 Pfam Histidine phosphatase superfamily (branch 1) 23 94 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01160 Cca-Chr5 29010287 29016209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01160 - - gmx:100817808 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01160 05 29010287 29016209 Cca05g01160 05 29010287 29016209 ECH