Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01156 ATGGCTTCGTTTCTTTCCACTGCTGTCATTGCAACTCTCAAACTCCACCCACACTTCAGAAAATACCCGCCAACCTCCTATCCCACAGACAAGGGGCAAAGCATTTCTTTACAGAAAAACCACAGATTCACTTATTTGGATCCCAGCAGGTATCCTGATTTTCGGGAAGCGCTTACGTTGGCCAAAGAGGGGTCAAAGGAGGTGGAACAATCTTTCTACGCTCCCTTGTTGCAGCAATGCTTAGACAAGTGCTCCTATTCAGACACACAAATTGTTCATGGTCATGTCATGAAAACAGGTACCCATGAGGACTTTATTGTCATGTCATTTCTGGTCAACGTTTATGCCAAATGTGGAAACATGGAGGATGCTCGCAGGGTCTTTGACAACTTGCCTAGAAGAAACGTGGTGGTGTGGACCACGTTAATGGTGGGTTATGTGCAGAACTCGCAGCCAGAGCATGCCATTCATATGTTTCAAGAAATGTTGCATGCAGGAAGTTACCCTTCTGTTTACACTCTTGCTGTAGCTCTAAAAGCTTGCACTTCTTTGCAGTCTCTCAAGTTAGGAGATCAATTTCATGCTTACATAATCAAATACCTTGTTGATTCTGACCCCAGTGTTGGCAGTGCACTTTGTAAATTATACTTCAAATCTGGCAGGTTGGAGTATGCTCTGAAAGCATTTAGGAGAATCGGAGAAAAGAATGTTATTTCGTGGACTTCAGCTGTTTCTGCTTGTGGGGAAAATGGTGCACCTGTGAAGGGGTTGAGACTTTTTGTTGAGATGATTTATGAGGAAATGAAGCCTAATGAGTTAACTTTAACTAGTGTATTGAGCCAGTGTTGTGAAATTCGGTCTTTGGAATTTGGGACTCAGGTTCATTCCTTGTGCATTAAATTCGGCTATGAATCAAACTTACTTGTTAGGAATTCTTTGTTGTATTTGTACCTCAAATGTGGGTTTATTGGTGAGGCTCAAAGGTTGTTTAATGGAATGGATGATGTCAGTTTGATTACGTGGAATGTGATGATTGCTGGACATGCGCAGATGATGGAACTTGTAAAGGATAATCTTTCTGCATGCCAAAGTGGAAGTGAAGCACTGAAACTTTTCTCCAAGTTGAATCGGTCAGACATGAAACCTGATCTGTTTACCTTCTCTAGTGTCTTAAGTGTTTGTAGTAGAATGGTGGCTCTAGAGCAGGGGGAACAGATTCATGCTCAGACTCTCAAAAGCGGATTCTTGTCTGATATGATTGCAGGTTCTTCACTGATTAATATGTACATTAAGTGTGGAAGCATTGAGAGGGCTAGCAAAGCATTTCTAGAGATGTCTACCAGAACTATGATTTTATGGACTTCTATGATCACAGGTTTTTCACAGCATGGTATGTCACAACAAGCATTGCATCTTTTTGAGGATATGACACTAGCAGGGGTTAGACCAAACGAGATCACTTTTGTGGGTGTTTTAGCAGCATGTAGCCATGCTGGGATGGTAAGTAAAGCACTTAACTACTTTGAGATTATGCAAAAGAGATATAAAATTAAGCCTGTTATGGACCATTATGCTTGCATAGTTGATATGTTTGTGAGGTTAGGCCGTTTGGAGGAAGCTCTCAGTTTCATTAGCAAAATGAATTATAAACCTAGCGAGTATATTTGGTCAAACTTGATTGCTGGTTGTAGAAGCCATGGGAATCTGGAAATGGGGTTTTATGCTGCCGAACAGTTACTAAAGCTCAAACCAAAAGATACAGAAACATATTTATTGTTGTTAAATATGTACCACTCAGCTGGGCGTTTTGAGGATGTTTCAAGGGTGAGGAAGATGATGGAAGAGAAGAAAGTTGGAAAATTAAAGGATTGGAGCTGGATTAGCATTAAAGACAAAGTGTATTCATTTAAAACCAATGACAAAACACACCCACAGAGCTCACTAATAAGTAAATCATTGGAGGATTTGCTTGCCAAAGCAAAAAATCTTGGATATGAGGTGCTAGAAAGTGTTGAAATAAGTGATGAAGAGAAGGAGGAAAAGACATCTTCCTCTACCATTTATCACAGTGAGATGCTGGCCATTACATTTGCGTTGGAGAACTTGCCAAAATTTTCTCCAATAAGAGTTGTCAAGAACACCTTAATATGCAAGGGTAGCCATGATTTTATTAAGTACGTTACAACACTGACCAGTAGGGAAATCATCCTTAAAGATAGTAAGCGGCTTCACAAATTTGTCGATGGAGAATGCTCATGTGGAAATTTTGATGGATTTCTCTAA 2283 0.4025 MASFLSTAVIATLKLHPHFRKYPPTSYPTDKGQSISLQKNHRFTYLDPSRYPDFREALTLAKEGSKEVEQSFYAPLLQQCLDKCSYSDTQIVHGHVMKTGTHEDFIVMSFLVNVYAKCGNMEDARRVFDNLPRRNVVVWTTLMVGYVQNSQPEHAIHMFQEMLHAGSYPSVYTLAVALKACTSLQSLKLGDQFHAYIIKYLVDSDPSVGSALCKLYFKSGRLEYALKAFRRIGEKNVISWTSAVSACGENGAPVKGLRLFVEMIYEEMKPNELTLTSVLSQCCEIRSLEFGTQVHSLCIKFGYESNLLVRNSLLYLYLKCGFIGEAQRLFNGMDDVSLITWNVMIAGHAQMMELVKDNLSACQSGSEALKLFSKLNRSDMKPDLFTFSSVLSVCSRMVALEQGEQIHAQTLKSGFLSDMIAGSSLINMYIKCGSIERASKAFLEMSTRTMILWTSMITGFSQHGMSQQALHLFEDMTLAGVRPNEITFVGVLAACSHAGMVSKALNYFEIMQKRYKIKPVMDHYACIVDMFVRLGRLEEALSFISKMNYKPSEYIWSNLIAGCRSHGNLEMGFYAAEQLLKLKPKDTETYLLLLNMYHSAGRFEDVSRVRKMMEEKKVGKLKDWSWISIKDKVYSFKTNDKTHPQSSLISKSLEDLLAKAKNLGYEVLESVEISDEEKEEKTSSSTIYHSEMLAITFALENLPKFSPIRVVKNTLICKGSHDFIKYVTTLTSREIILKDSKRLHKFVDGECSCGNFDGFL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01156 760 Pfam PPR repeat family 451 495 IPR002885 -
Cca05g01156 760 Pfam PPR repeat family 134 181 IPR002885 -
Cca05g01156 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Cca05g01156 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Cca05g01156 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Cca05g01156 760 Pfam E motif 566 627 IPR046848 -
Cca05g01156 760 Gene3D Tetratricopeptide repeat domain 513 706 IPR011990 GO:0005515
Cca05g01156 760 Pfam PPR repeat 423 446 IPR002885 -
Cca05g01156 760 Pfam PPR repeat 524 547 IPR002885 -
Cca05g01156 760 Pfam PPR repeat 311 333 IPR002885 -
Cca05g01156 760 Pfam PPR repeat 238 264 IPR002885 -
Cca05g01156 760 Gene3D Tetratricopeptide repeat domain 357 512 IPR011990 GO:0005515
Cca05g01156 760 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 65 692 - -
Cca05g01156 760 SUPERFAMILY TPR-like 104 609 IPR011990 GO:0005515
Cca05g01156 760 Pfam DYW family of nucleic acid deaminases 674 756 IPR032867 GO:0008270
Cca05g01156 760 PANTHER OS01G0913400 PROTEIN-RELATED 65 692 - -
Cca05g01156 760 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Cca05g01156 760 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
Cca05g01156 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Cca05g01156 760 Gene3D Tetratricopeptide repeat domain 56 194 IPR011990 GO:0005515
Cca05g01156 760 Gene3D Tetratricopeptide repeat domain 195 301 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01156 Cca-Chr5 28961822 28965819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01156 73 756 Glycoside Hydrolase AT3G49170 33.957 1.15e-139 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01156 - - gmx:100781103 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01156 05 28961822 28965819 Cca05g01156 05 28961822 28965819 ECH