Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01155 aTGGCCATGGCTCTTCGCAGACTTTCCTCCAAGCCCTTCGCCAACGCCACTTCCATTTATCGCACGTCCTCTTCGCTCTCCGCTCACCAAAACGACAAATCTCGCGTCGACTGGATTAAGCAGCTCAACGATCCTCTCGAGGTCGTCGATCCCGAGATCGCGGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGGGGCTCGAACTTATACCTTCGGAAAACTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAGTATAGTGAAGGATATCCTGGTGCGAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTCGAAGCTTTTCGGTTGGATCCTGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCACGAGAGAATTATGGCTCTTGATCTTCCCCATGGTGGGCATCTATCACACGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGTAAGGTCTGTGATAAGCAAAAGGCAGTTCTATTGGCTGATATGGCACATATTAGTGGATTGGTAGCGGCGGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACAACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTCCCTGGACTTCAAGGTGGTCCACACAATCATACTATTTCAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTGACAACTCCTCGGCATTTGCACAGAGTTTGTTAGAGAAAGGCTATGATCTTGTATCTGGTGGAACAGAGAACCATTTAGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGCTCTAGGGTTGAGAAGGTATTAGAAGCAGTTCACATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGGATGGGAACCCCTGCTCTCACATCCAGAGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCCGAGTACTTTGATGCAGCTGTTAAGTTAGCCTTGCAGATTAAGGAAAATACCAATGGTTGA 1383 0.4454 MAMALRRLSSKPFANATSIYRTSSSLSAHQNDKSRVDWIKQLNDPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTPEFKNYQKQVLDNSSAFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01155 460 Hamap Serine hydroxymethyltransferase [glyA]. 45 460 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca05g01155 460 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 269 285 IPR019798 GO:0030170
Cca05g01155 460 Pfam Serine hydroxymethyltransferase 46 443 IPR039429 -
Cca05g01155 460 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 24 459 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca05g01155 460 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 24 459 - -
Cca05g01155 460 Gene3D Aspartate Aminotransferase, domain 1 50 458 IPR015422 GO:0003824
Cca05g01155 460 PIRSF SHMT 26 459 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca05g01155 460 CDD SHMT 49 456 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca05g01155 460 Gene3D - 75 348 IPR015421 GO:0003824
Cca05g01155 460 SUPERFAMILY PLP-dependent transferases 33 457 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01155 Cca-Chr5 28952674 28959496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01155 K00600 - gmx:100812952 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01155 05 28952674 28959496 Cca05g01155 05 28952674 28959496 ECH