Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01144 ATGTCTTGGGAAGAAGCTCTTTATACTCTTTTAACCAAAACATTCACAGTTCTTGCCTGGCCTCCGTTTAGTTTGCTTTGTCCATTGTTCGTTTCCGTTCGGGCAATGGAGAGTGATTCCCATTCCAGCAACCAGCGATGCCTTGTTTTTTGGGTTCTGTTTTCCTTCTCAATGATCATGGAATGGGAACTTTCTGTGTTATTCAACTGCCTCCCGTGGTGGCCCCATGTGAAATCCGTAGCAACTATCTTGCTGTTGACACCTTATGTTGGTGCAGCATCATATGTCTACAAATTCGTAATTAGACACTACTTTACTTGGAACCTATATAAAAGGGCATCAACCGAATTCAGTCAGAAAAGCACGCATTTTGAATCAGATGAGATTAGTAAACCTGTTGATGCCTCTGACCAGCCAATTCCGACAAGACACATACAAGAAAAGAAACTTGAAGCATATCATCAGGAGATAGATGATCTTGCTGGCTGTGACAAGACAGAAAGCAGTTATAGAAGGGTAACTGGTATAATGCTAATCCAGAAGGAATGGAGCTGTGCTTTATGTCAGATTAGTACCACCAGTGAAAATTGCTTAAGGACACATCTTAATGGGAAGAAACACAAGGCTAAGGAAGAAGAGCATAGAGTTGAGTTTCATGTAACAAATAGCGCATACCTGTTATCCTCTACTCAAAAAAGCAGCAAAGGGATGGTTCTACTAAGGAATCTCAACCAAATTGCAAACATTCTCAATCCAGTTTCCAGATCCATGAGATGGTGTGAATGGACAAAGCCAGAGTTTGGATGGACAAAATTAAATACTGATGGTTCTTTACATAGAGAAACTGCTAGTTTTGGGGGGCTGCTTCGTGATTACCGTGGTGAACCAATCTGTGCTTTTGTCTCCAAAGCTCCTCAAGGTGATGTTTTTTTTGTTGAGCTGTGGGCCATATGGAGAGGCCTTGTTCTTTGCTTAGGTCTTGGGATTAAATCAATATGGGTGGAATCAGACTCTATGAGTGTTGTGAAGACAGTTAATAGAAAACAACTTTGTCCAAAAGCTGATAGCTATTTGAAACAAATCTGGAAGCTATTAAAGAAGTTTGATAAATACAGAATTTCTCACTCATGGCGTGAAACTAATAGAGCAGCTGATCATCTTGCTAAGATGGCTCTTTGGGGAGACGACGTGGTTTTGTGGCCAGTTGATTTTCCACCTAGCCTTTGCAGCATCATAAAAGATGATGCCGAAGGGAAGAAGTATCTTAGACGATGA 1275 0.4102 MSWEEALYTLLTKTFTVLAWPPFSLLCPLFVSVRAMESDSHSSNQRCLVFWVLFSFSMIMEWELSVLFNCLPWWPHVKSVATILLLTPYVGAASYVYKFVIRHYFTWNLYKRASTEFSQKSTHFESDEISKPVDASDQPIPTRHIQEKKLEAYHQEIDDLAGCDKTESSYRRVTGIMLIQKEWSCALCQISTTSENCLRTHLNGKKHKAKEEEHRVEFHVTNSAYLLSSTQKSSKGMVLLRNLNQIANILNPVSRSMRWCEWTKPEFGWTKLNTDGSLHRETASFGGLLRDYRGEPICAFVSKAPQGDVFFVELWAIWRGLVLCLGLGIKSIWVESDSMSVVKTVNRKQLCPKADSYLKQIWKLLKKFDKYRISHSWRETNRAADHLAKMALWGDDVVLWPVDFPPSLCSIIKDDAEGKKYLRR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01144 424 Pfam Zinc-finger of C2H2 type 183 207 - -
Cca05g01144 424 Gene3D - 269 392 IPR036397 GO:0003676
Cca05g01144 424 SUPERFAMILY beta-beta-alpha zinc fingers 180 217 IPR036236 -
Cca05g01144 424 SMART ZnF_U1_5 180 214 IPR003604 GO:0003676|GO:0008270
Cca05g01144 424 Pfam TB2/DP1, HVA22 family 28 104 IPR004345 -
Cca05g01144 424 SUPERFAMILY Ribonuclease H-like 269 399 IPR012337 -
Cca05g01144 424 PANTHER HVA22-LIKE PROTEINS 3 424 IPR004345 -
Cca05g01144 424 Pfam Reverse transcriptase-like 273 391 IPR002156 GO:0003676|GO:0004523
Cca05g01144 424 Gene3D Classic Zinc Finger 172 215 - -
Cca05g01144 424 CDD RNase_H_like 272 389 IPR044730 -
Cca05g01144 424 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 3 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01144 Cca-Chr5 28793195 28797430 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01144 - - gmx:102661917 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01144 05 28793195 28797430 Cca05g01144 05 28793195 28797430 ECH