Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01140 ATGGTCCTCCTGATGGTCTTCTCCTACTTCTTCATGAACGACATCCCCAAAAAGCTATGGACCAAGCTCCGCACGCGCAACCGCGCCGACATCCAATCCAAGCGCCACTTCGTCGAAGGAGCCCAGCTCCTCGCCCGGGCCCGCTCCTCCAAGTCCCGGGCCCTCGCCAAGGAAGCCCAAGCCCGGGCCCAGCGCGCCATCTCCCTCGACCCCACCGACGCCGCCCCCTACCTCCTCAAAGCCCTCGCCCTCGACTTCCAGGGCCTCCGCTCCGCCGCCCTCGACTCCATCGACCAGGCCCTCTCCCCCCTCGCCGCCGCCTCCCTCTCCGACTCCGAGCGCGCCGACGCGCTCCTCAAGCGGGCCGAGTTGAGACTCGCCTCCAGTCAACGCGGCCGAGTCGACTCGGCCCTCGCCGATTTGGAGGAGTCCGTCGAACTCAGCCCCAACAACGCCAAGGCCTTTTCCGCGCTGGGAGAGTGCTACGTGCGGAAGAAGATGAACGACGACGCCGTTAGGGCTTACCGGCAAGCTCTCCAATTGGAACCCCAATTGCTTGCGGCGCAACAAGCCCTCCAAAGGGTCCAGCTTTGGTTAGAGAAGATTGGTGCGATTGAACCTTTCTCTGGAAACCTTGCCACTTGTTGGAGCAATATCAAAGAGGAGGAGGCACTTGAAAGATACAAACTGATAACTGGAAATACTGTGTTGTTTCCTGAATTTCAGGTCTATGATGTACACACAGAAGATAGATGGCTAGCTGCTTCACCTGACGGTGTAATTGACAGTCTGGTGCATGAGTTGCCCTCTCGGGGAGTACTAGAGATAAAGTGTCCATATTTTGATGGGAACATAAGCAAAGCTTTCCCTTGGTCTCGAATTCCAATTCACTATATTCCTCAAGCTCAGGGTTTGATGGAGATTCTTGGAAGGGATTGGATGGATTTTTATGTTTGGACTCCTAATGGTAGTAGTCTATTCAGGATACATCGTGATGCAGAGTATTGGGATGTAATGAAAATAGCGCTATATGATTTCTGGTGGAAGCATGTCCAGCCTGCAAGAGAGTTGTATAGTAGTTACATGGAGGATTCAGAGCAAAGGAAGAAAAGGCTGAAAGAAATGCGCATGCAAGCTGATCAAGCTGAAGTTTCTGGTGGTGTTGAAGGTTCCCCAATGCCCGGTTTTCTCTCAAATCCCCTGATTGAAGCTCCTTCAACTATGCCATCACAGGATAGATCATATGCTGCTCCAAGGTTTGACTATTATACTGATCCAATGAGTGCATTCTCTTCTAACAAAAGGTACAATGCCAGTATCCAGGCTGCACCAGATAATTTCCCTCCTTCAAAATTTGGTGGTTCTCCTGTGGCACAATATTCATCACCACATCCAGAATCAACAAATCCACAGGTGACTCCGCCTCCTAATCAACTATCGCCAGCTGCATATAGAAACCCAGTCTGGAGTGGACCTAAAGAACCTCCTCACTATAATTTTTCATTCCATCCGTCAAGTGGTGGTGCTAATGCAAGTCCTAGATTTGAACCATCAGGTGGTCCATCATATAACTCTACACAGGGCATAGCTCATCGGCCTAGTTTCAATCATAATAACTATGCACTGGGAACTGCTCATATTCCCAATTTCAGTCCTAATAACCCTGCACAGGGCATAACTCATCGGCCTAGTTTCAGTCCTAATAACTATGCACAGGGCATAACTCATCGGCCTAGTTTCAGTCCTAATAACTATGCACAGGGCACTGCTTATATTCCCAATTACAGTCCTAATAATCCTGCACAAGGCATAACTAATCGGCCCAGTTACAGTCCTAATCCTTCTCCAGGATACAGGAACAGTCCTAGCCCTGTTCAAGGGCGAGGGAGGGGTTTCTGGCGCAACACTGGAAGCCCTGTTTCAGGACGGGGTAATTTTCATGATTACAGGTCCAATGAAAACATATCTCGTGGTCCAGCTCAATTTTACAAGAGTTCCATGGTTGAAGATCCATGGAAGCATTTAGAACCTATAATATGGAAGGCAAATAGTGGTTCTTTAAATACGACACATATACCTAAGAATTCAAAACCCTGGATTTCAAAATCAACTAGTACAAAAACGGAGGGATCATCTGCTGCTCCTGCTTCTGACAAGTTCAGTTCTGAACCAAGCCTTGCTGAGTACTTGGCTGCTGCATTCAAGGAAGCTGCCAATGATGCAGAAAATGCATGA 2235 0.4931 MVLLMVFSYFFMNDIPKKLWTKLRTRNRADIQSKRHFVEGAQLLARARSSKSRALAKEAQARAQRAISLDPTDAAPYLLKALALDFQGLRSAALDSIDQALSPLAAASLSDSERADALLKRAELRLASSQRGRVDSALADLEESVELSPNNAKAFSALGECYVRKKMNDDAVRAYRQALQLEPQLLAAQQALQRVQLWLEKIGAIEPFSGNLATCWSNIKEEEALERYKLITGNTVLFPEFQVYDVHTEDRWLAASPDGVIDSLVHELPSRGVLEIKCPYFDGNISKAFPWSRIPIHYIPQAQGLMEILGRDWMDFYVWTPNGSSLFRIHRDAEYWDVMKIALYDFWWKHVQPARELYSSYMEDSEQRKKRLKEMRMQADQAEVSGGVEGSPMPGFLSNPLIEAPSTMPSQDRSYAAPRFDYYTDPMSAFSSNKRYNASIQAAPDNFPPSKFGGSPVAQYSSPHPESTNPQVTPPPNQLSPAAYRNPVWSGPKEPPHYNFSFHPSSGGANASPRFEPSGGPSYNSTQGIAHRPSFNHNNYALGTAHIPNFSPNNPAQGITHRPSFSPNNYAQGITHRPSFSPNNYAQGTAYIPNYSPNNPAQGITNRPSYSPNPSPGYRNSPSPVQGRGRGFWRNTGSPVSGRGNFHDYRSNENISRGPAQFYKSSMVEDPWKHLEPIIWKANSGSLNTTHIPKNSKPWISKSTSTKTEGSSAAPASDKFSSEPSLAEYLAAAFKEAANDAENA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01140 744 SUPERFAMILY Restriction endonuclease-like 194 360 IPR011335 -
Cca05g01140 744 PANTHER EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN 193 371 - -
Cca05g01140 744 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Cca05g01140 744 Gene3D Tetratricopeptide repeat domain 93 179 IPR011990 GO:0005515
Cca05g01140 744 Pfam YqaJ-like viral recombinase domain 193 308 IPR019080 -
Cca05g01140 744 SUPERFAMILY TPR-like 64 202 IPR011990 GO:0005515
Cca05g01140 744 PANTHER RESTRICTION ENDONUCLEASE, TYPE II-LIKE SUPERFAMILY PROTEIN 193 371 - -
Cca05g01140 744 Gene3D - 180 369 IPR011604 -
Cca05g01140 744 Coils Coil 362 382 - -
Cca05g01140 744 MobiDBLite consensus disorder prediction 690 722 - -
Cca05g01140 744 MobiDBLite consensus disorder prediction 690 719 - -
Cca05g01140 744 ProSiteProfiles TPR repeat region circular profile. 152 184 - -
Cca05g01140 744 MobiDBLite consensus disorder prediction 503 622 - -
Cca05g01140 744 MobiDBLite consensus disorder prediction 638 652 - -
Cca05g01140 744 SMART tpr_5 115 151 IPR019734 GO:0005515
Cca05g01140 744 SMART tpr_5 152 185 IPR019734 GO:0005515
Cca05g01140 744 MobiDBLite consensus disorder prediction 441 652 - -
Cca05g01140 744 Pfam Tetratricopeptide repeat 152 184 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01140 Cca-Chr5 28685918 28696833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01140 - - gmx:102669819 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01140 05 28685918 28696833 Cca05g01140 05 28685918 28696833 ECH