Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01125 ATGCGTGTCACCGTCGATCTAGGGTTTTGGAGCCTCGTCCTCGTCGCGCTGCTTTGCGTCGTCCTGCCGGCCACCGGCTTAGCTTTCCGTCGCTGGTTGCGCCGCGCGGCGGCCAGGGCCGAGGAGATCAAGAGGCGCCTGGTTCTCGCGGAGGAGGAGACCGTCAGGGCCGAGACCGAGGCCGCTTCGTACCAGTACGGCGCCGTTTCGGCCGCCAAGAACAAACTATGCGCCATGTGTTACTGTCCAACCACCACGCGCTGCGCGCGGTGCAAAGCGGTTCACTACTGTTCCGCAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGACAAATGCTGTCCTCCCAGTCCAACTTTCCAGAATGATGATCTGGTAAATGATATTGGAAAGAAGGTAGCAGAACCAGACCACCGCACTATCCATGATGAGAGGTCTCAGATTGAAAGCACAGAGTATAGAACATCCTCTGAGAAACCCCTTTTGTCTGATATTAGCTGTTCTCCTGACATTTCATCTGCAAAGGATGACAATGTGAGAGTTGAATCTCTTCAGGTGGGAAATATTAAAGGCTCTAATTCTGAATTATCTAGTAACTCATTCTCTGGATTCTCAGCTTCCACTGGTGCTAGTGAATCATCTGATGATTCTTCTGTCTCTGAGAGTATCACCTTCAATGAGCATGAGAAATCTGAGGGACATATTTTTGGGGATCCTGCCCATGACATTTTTGATGCCATTTCAAGTCATAATAGCATTGGTGAATCTCTTTCTTTATCACCTAAGTTTGCTAGTTTGGTTGATTCAGTGGATGGTTATCCTGCAATGCATAAATTAAATCCAGTTAGAACTGGTTTTGGTAAAGAAGAGAGTAAGCTCCCATCACATGGTAGTCCTGGAACAATTGAGCCTTCTACAGTGTCTTCTGGATTCTGGAATAGAACTCTTGATTCAACAGGGATAAAAAATGACTCTAATAGTGGCCCTCTTCCATCCCAGTCTGATGATCCTCCTCCAAAGTCAGTTGAGAACAATATGTCACATGCTGGATCAGCATCTTCAGAGACTGAGGGTGTTGATTCTTCAGGTCGTGTTGATGCTTCAAGCGTCCATAACTTGCAAACGGTTTGTTCTAGGGCATCAAATCATGTTGCTATCAACCATGGTAGCACCTTGAAGTCAGCTGAAAGTAGATGTCTGCCACATGCATTTGCTGATACTAAGTTAGTGTCTAGAACTGAAGAGCATTCACATTATAGCACAAAATATGGGAATAATGGCATCCAATCTGGCACTGCTACTTCATCTCAGGTTGTTAGCTGCTCTCCAAATTCTAAGAATGACCTGAAAACATCTGTTCCAAAAGTTTCGGATCAGTTTAGAGGATCAAAGTTGTCCAAACCCTTCAAATTAGCTGATGGGAGTGATATTACTGCAAAATACAGTGACAAGTTGTTGCAGGGTCTTTTTCCATATGATTTGTTTGTCAGGCTTTATAACTGGAACAGAGTGGAGTTGCAACCATTCGGTCTTGTAAACTGTGGAAACAGCTGTTATGCAAATGCTGTACTCCAGTGCTTGGCATTTACACCACCCCTGACTGCTTATTGGCTTCAAGGATTTCATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAGCTTGAAAGTTTGATTTTGAAGTCAAAAGACACCAAATCTCCTGTCTCACCTGAGAGCATACTATCTGAACTACATAATAATGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCGCATGAATTCCTAAGGCTTGCTGTTGAGACAATGCAATCTGTTTGCCTTATCGAATCTGGGGATAACACATCAGACTCGTTAAAAGAGGAAACTAATTTGATGGGCCTAACATTTGGAGGTCACCTTCAATCAAAGATAAAATGCATGAAATGTGGAGGAAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATAGCAACCCTAGAGGAGGCCCTTCGACAGTTTACTAGTGCCGAGACTCTGGATGGAGAAAACAAGTACCACTGTATCAGCAGTTGTAAATCTTATGAGAAGGCCAAGAAGAAAATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCAGGAAAATATGGGAAGCTCAATAAACCTATTCGGTTTCCTGAAATACTTGACTTGGCCCCTTTCATGAGTGGGACTAGTGATTTGCCTATATACAGGCTATATGGGGTAGTTGTTCACCTGGATATCATGAATGATGCCTCTTCGGGTCACTATGTTAGCTATGTGAAGAATTTCCAAAGCAAGTGGTTCAAGGTTGATGATAGTGTGGTGACAGCTGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCATACATGCTTTTCTACGCAAGGTGCTCACCTAGGGCCCCAAGAGTAATCAGGAACAGTATAATATCTTCAGATTCAAAATGGAAACTCAATGGAAAAACTGTTACAATGAAGTCGAGACGAGTATCTGCAGTTTCTGGTGCTGGTGAATGCATAACTAGTTTGTCTTCTCCAGATGGTTCTCTCTCCTTAGATACCATCTATTCAAAGTTTCACCAAAGGAAAAGGATTTTGGAAGAAGACTCATCAAGTGATAATTCATCCCTTCTCAGCAGCAATTCTGATGTAGCTTCTTGCAGTACAGATAGCACCTGTGATTCAACCAGTACTGATGACTTTGCTGATTATATTTTTGGTGATTCGGGACGCGGCTCTGGTGGCATGTTGAGAAATTCCGATTCCAACATTTTCTCTGCATTGCCATCTTCTCCCTTGAAATCTATATATTCGGCGTCCTCCGATATGGATCCATATGATTCAGTTTTGCCACATTCAACTGGGTTCCAAACACCTCCTTCAGGTCCAAAGGTGGGGGTAGACGGTCTTTTGTACAGTAGACTAATGGATGTTAAAAGGAGTGGGGAAAGTGTTCCTCATTTTCGTCCTGACACAAATATAGAGCATAGGAAGTTAGATACAAGTAGGAGTAGCAGTAGTTTTAGGGAGACTGACTCTATACAAAGAGCAGGATCCAACCATTTTAATGATAGAAATTCTGGTGTATCTTGTTTAAAGTCAAGGGACAGAACGGATTGA 3174 0.4326 MRVTVDLGFWSLVLVALLCVVLPATGLAFRRWLRRAAARAEEIKRRLVLAEEETVRAETEAASYQYGAVSAAKNKLCAMCYCPTTTRCARCKAVHYCSAKCQIVHWRQGHKDKCCPPSPTFQNDDLVNDIGKKVAEPDHRTIHDERSQIESTEYRTSSEKPLLSDISCSPDISSAKDDNVRVESLQVGNIKGSNSELSSNSFSGFSASTGASESSDDSSVSESITFNEHEKSEGHIFGDPAHDIFDAISSHNSIGESLSLSPKFASLVDSVDGYPAMHKLNPVRTGFGKEESKLPSHGSPGTIEPSTVSSGFWNRTLDSTGIKNDSNSGPLPSQSDDPPPKSVENNMSHAGSASSETEGVDSSGRVDASSVHNLQTVCSRASNHVAINHGSTLKSAESRCLPHAFADTKLVSRTEEHSHYSTKYGNNGIQSGTATSSQVVSCSPNSKNDLKTSVPKVSDQFRGSKLSKPFKLADGSDITAKYSDKLLQGLFPYDLFVRLYNWNRVELQPFGLVNCGNSCYANAVLQCLAFTPPLTAYWLQGFHSKSCANKKWCFTCELESLILKSKDTKSPVSPESILSELHNNGSQLGNGREEDAHEFLRLAVETMQSVCLIESGDNTSDSLKEETNLMGLTFGGHLQSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALRQFTSAETLDGENKYHCISSCKSYEKAKKKMTVLEAPNVLTIALKRFQSGKYGKLNKPIRFPEILDLAPFMSGTSDLPIYRLYGVVVHLDIMNDASSGHYVSYVKNFQSKWFKVDDSVVTAVELESVLAKGAYMLFYARCSPRAPRVIRNSIISSDSKWKLNGKTVTMKSRRVSAVSGAGECITSLSSPDGSLSLDTIYSKFHQRKRILEEDSSSDNSSLLSSNSDVASCSTDSTCDSTSTDDFADYIFGDSGRGSGGMLRNSDSNIFSALPSSPLKSIYSASSDMDPYDSVLPHSTGFQTPPSGPKVGVDGLLYSRLMDVKRSGESVPHFRPDTNIEHRKLDTSRSSSSFRETDSIQRAGSNHFNDRNSGVSCLKSRDRTD 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01125 1057 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 511 526 IPR018200 GO:0004843|GO:0006511
Cca05g01125 1057 MobiDBLite consensus disorder prediction 1024 1047 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 889 913 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 435 454 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 299 368 - -
Cca05g01125 1057 Gene3D Cysteine proteinases 503 825 - -
Cca05g01125 1057 SUPERFAMILY Cysteine proteinases 506 818 IPR038765 -
Cca05g01125 1057 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 510 815 IPR028889 -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 193 225 - -
Cca05g01125 1057 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 154 170 - -
Cca05g01125 1057 Pfam Ubiquitin carboxyl-terminal hydrolase 510 812 IPR001394 GO:0004843|GO:0016579
Cca05g01125 1057 MobiDBLite consensus disorder prediction 1001 1023 - -
Cca05g01125 1057 Gene3D - 65 117 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 888 913 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 1001 1057 - -
Cca05g01125 1057 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 1040 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 282 368 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 193 222 - -
Cca05g01125 1057 MobiDBLite consensus disorder prediction 149 170 - -
Cca05g01125 1057 Pfam MYND finger 77 114 IPR002893 -
Cca05g01125 1057 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 20 1040 - -
Cca05g01125 1057 SUPERFAMILY HIT/MYND zinc finger-like 74 116 - -
Cca05g01125 1057 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01125 Cca-Chr5 28464587 28472451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01125 490 819 Miscellaneous Gene Families AT4G31670 50.000 4.01e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01125 K11855 - gmx:100782303 1457.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01125 05 28464587 28472451 Cca05g01125 05 28464587 28472451 ECH