Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01122 ATGTCGAGTGGTGGAAACCTGAGTTGCGTGTTGGTGTCCGTTGATGGCAGCGAGGAAAGCATGAACGCGCTGCGTTGGGCATTCACCAACCTCAAGCTCCGATCCCCTGCGCCCGATTCCACCCATCCTCCTTCTTTCGTCATCTTCCACGTTCAATCTCCGCCCTCCATCGCCACCGGCCTCAATCCCGGTGCTATCCCCTTCGGTGGCCCCAGTGACATCGAAGTTCCTGCTTTCACTGCCGCCATCGAAGCGCACCAGAAACGCATCACCAACGCAGTAATCAATCATGCCTTGGAAATATGCTCCGAATTCAACGTCACCAGTAAGGTCAGATCCCATGTCGTTGTTGGAGATCCAAAGGAGAAGATTTGTGAAGCCGTGCAGGATTTGCATGCTGATGTGCTTGTGATGGGGTGTCGTTCATTTGGCCCCATTAAAAGGATGTTCCTGGGAAGTGTTAGCAATTACTGTGCCCACAATGCTCCTTGCCCAGTCATTATTATCAAGGGAAATGACTGTGTCGTTAAGAAAAATTGA 540 0.5148 MSSGGNLSCVLVSVDGSEESMNALRWAFTNLKLRSPAPDSTHPPSFVIFHVQSPPSIATGLNPGAIPFGGPSDIEVPAFTAAIEAHQKRITNAVINHALEICSEFNVTSKVRSHVVVGDPKEKICEAVQDLHADVLVMGCRSFGPIKRMFLGSVSNYCAHNAPCPVIIIKGNDCVVKKN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01122 179 PRINTS Universal stress protein signature 7 25 IPR006015 -
Cca05g01122 179 PRINTS Universal stress protein signature 130 142 IPR006015 -
Cca05g01122 179 PRINTS Universal stress protein signature 148 170 IPR006015 -
Cca05g01122 179 Gene3D HUPs 2 177 IPR014729 -
Cca05g01122 179 Pfam Universal stress protein family 103 170 IPR006016 -
Cca05g01122 179 CDD USP_Like 10 169 - -
Cca05g01122 179 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 4 171 - -
Cca05g01122 179 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 173 - -
Cca05g01122 179 PANTHER OS02G0760500 PROTEIN 4 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01122 Cca-Chr5 28440496 28442451 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01122 - - ccaj:109815017 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01122 05 28440496 28442451 Cca05g01122 05 28440496 28442451 ECH