Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01102 ATGAGAGAGAAGCagggtgagggtgagggtgagggtgaggAGCAGCACCGGTCCTTCGAAATCACGGAATCCTCGACTTCCAAGAGCCGAACCTGCGCTCAGTCGGAGCCCCACGCCCCCTTCCCGGACCAGGTCCTGGAGAACGTCCTGGAAAACGTGCTCCACTTCCTGACCTGGCGGCGAGACCGGAACGCCGCCTCATTGGTGTGCCGCTCCTGGTACCGTGCGGAGGCTCTGACCCGATCCGACCTCTTCATCGGCAACTGCTACGCCCTCTCCCCCAACCGTGCGACCTCGCGTTTCACTCGCGTCAAGTCCCTCACCCTCAAGGGCAAACCCCGCTTCGCTGACTTCGACCTCCTGCCCCTCGATTGGGGGGCCCACTTCGCCCCTTGGGCCTCCGCCTTGGCCCAAGCCTACCCCTTCCTCGAGAAGCTCCACCTCAAACGCATGTCCCTCACCGACCACGACCTCGCCCTTCTCGCCGACTCCTTCCCCTCTTTCCGCGAACTCGTCCTCGTTTGCTGCGAAGGCTTCGGCACCCCCGGCCTTGCCGCCCTCGCCGCCAAGTCCAGGTCGCTTAGGGTGCTTGAGCTTGTGGAATCTGTGGTGGGGCTTGAGGACGATGAGGAGGTCGATTGGATTTCGTGTTTTCCCGACACCCACACCAATATGGAGTCTCTTATGTTCGATTGCGTGGAGTGTCCCATTAATTTCGAGGCTTTGGAGGCTTTGGTGGCTAGGTCACCTTCCTTGAAGAAGCTTCGTCTGAACGGATCTGTCTCCATGGCTCAGCTTTACCGGTTAATGCTTCGGGCTCCTCAGCTTACTCACCTTGGAACTGGCTCCTTCAGTGCTACGGAGGGCGCGCCGCTTCCCGATCAGGAGCCCGATTATGCCGCCGCCTTTCAGGCTTGCAGATCCTTGGTTTGCCTCTCCGGATTCAGGGAGATTTGGTTGGATTACCTTCCGGCCATTTTTCCGGTTTGCGCGAATCTTACTTCGTTGAATTTGAGCTACGCGGATGTCAATGCGCTTCAGCTCAAGTCGGTGATTCGACACTGTCATAAGCTGCAGATATTGTGGGTGCTTGATTCGATATGCGATGAAGGGCTTCAGGCGGTGGCGGCGACTTGCAAGGACTTGCGCGAGCTTCGGGTTTTCCCTGTGGATGCCAGGGAGGGGACGGAAGGGCCTGTTTCTGAGGTGGGTTTTGAGGCCATTTCTCAGGGTTGTAGGAAGTTGGAATCGATTTTGTTTTTCTGCCAGAGGATGACGAATGCGGCTGTGGTTTCCATGTCAAAGAACTGTCCGGATCTTGTGGTGTTTCGCTTGTGTATAATTGGGCGGTATAGGCCGGATGCGGTCACTCAGGAACCCATGGATGAGGGTTTTGGTGCTATTGTGATGAATTGCAAGAAGCTCACTCGGCTTGCTGTGTCTGGTTTGCTCACGGATCGTGCTTTTGAGTACATTGGCAAGTATGGGAAATTGGTTAGGACGCTATCAGTTGCCTTTAATGGGGACACTGACATGGCCCTTAAATATGTGCTTGAAGGATGCCCCAATTTGCAAAAGCTTGAAGTCAGGGATAGTCCTTTTGGAGATGTGGCTCTGCGATCCGGTTTGCATCATTATTACAACATGAGATTCCTCTGGATGTCGTCATGTAAATTGACGCGCCAAGCTTGCCAAGAAGTTGCGCGGGCATTGCCCCGCCTGGTTTTGGAAGTCATCAACAGTGAGTCGAAAGCAGGGGACGATATTGAGATATTGTACATGTATCGGTCTCTTGATGGGCCACGGGATGACGCTCCAAGAATTGTTACCATCCTGCATTAG 1842 0.5423 MREKQGEGEGEGEEQHRSFEITESSTSKSRTCAQSEPHAPFPDQVLENVLENVLHFLTWRRDRNAASLVCRSWYRAEALTRSDLFIGNCYALSPNRATSRFTRVKSLTLKGKPRFADFDLLPLDWGAHFAPWASALAQAYPFLEKLHLKRMSLTDHDLALLADSFPSFRELVLVCCEGFGTPGLAALAAKSRSLRVLELVESVVGLEDDEEVDWISCFPDTHTNMESLMFDCVECPINFEALEALVARSPSLKKLRLNGSVSMAQLYRLMLRAPQLTHLGTGSFSATEGAPLPDQEPDYAAAFQACRSLVCLSGFREIWLDYLPAIFPVCANLTSLNLSYADVNALQLKSVIRHCHKLQILWVLDSICDEGLQAVAATCKDLRELRVFPVDAREGTEGPVSEVGFEAISQGCRKLESILFFCQRMTNAAVVSMSKNCPDLVVFRLCIIGRYRPDAVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGKYGKLVRTLSVAFNGDTDMALKYVLEGCPNLQKLEVRDSPFGDVALRSGLHHYYNMRFLWMSSCKLTRQACQEVARALPRLVLEVINSESKAGDDIEILYMYRSLDGPRDDAPRIVTILH 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01102 613 Pfam F-box 43 82 IPR041567 -
Cca05g01102 613 Gene3D - 34 81 - -
Cca05g01102 613 Gene3D Ribonuclease Inhibitor 83 612 IPR032675 -
Cca05g01102 613 SMART LRR_CC_2 140 164 IPR006553 -
Cca05g01102 613 SMART LRR_CC_2 521 545 IPR006553 -
Cca05g01102 613 SMART LRR_CC_2 412 436 IPR006553 -
Cca05g01102 613 SMART LRR_CC_2 165 190 IPR006553 -
Cca05g01102 613 SMART LRR_CC_2 472 495 IPR006553 -
Cca05g01102 613 PANTHER F-BOX PROTEIN FBX14 31 611 - -
Cca05g01102 613 SUPERFAMILY F-box domain 40 76 IPR036047 GO:0005515
Cca05g01102 613 SUPERFAMILY RNI-like 67 575 - -
Cca05g01102 613 MobiDBLite consensus disorder prediction 1 39 - -
Cca05g01102 613 MobiDBLite consensus disorder prediction 1 23 - -
Cca05g01102 613 Pfam Transport inhibitor response 1 protein domain 103 148 IPR041101 -
Cca05g01102 613 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01102 Cca-Chr5 28157169 28159183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01102 - - gmx:100807836 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01102 05 28157169 28159183 Cca05g01102 05 28157169 28159183 ECH